Lothian Birth Cohort 1921 whole genome sequencing study - EGA European Genome-Phenome Archive

Study

Lothian Birth Cohort 1921 whole genome sequencing study

Study ID	Alternative Stable ID	Type
EGAS00001003818		Other

Study Description

297 members of the Lothian Birth Cohort 1921 (LBC1921) were sequenced using the Illumina HiSeq X platform. The LBC1921 are a relatively healthy cohort of 550 individuals who underwent cognitive and medical testing at a mean age of 79.1 (SD=0.6) years. They have since undergone four further waves of testing, approximately three years apart.

Study Datasets 3 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001005477	LBC1921 and LBC1936 GVCFs called with GATK's HaplotypeCaller were combined and subject to variant quality score recalibration. This VCF contains the subset of samples (n = 296) from the LBC1921 cohort. LBC1921 and LBC1936 GVCFs called with GATK's HaplotypeCaller were combined and subject to variant quality score recalibration. This VCF contains the subset of samples (n = 296) from the LBC1921 cohort.	Illumina HiSeq X Ten	296
EGAD00001006416	297 members of the LBC1921 were sequenced using the Illumina HiSeq X platform. This dataset contains the gvcfs. 297 members of the LBC1921 were sequenced using the Illumina HiSeq X platform. This dataset contains the gvcfs.	Illumina HiSeq X Ten	297
EGAD00001008775	297 members of the LBC1921 were sequenced using the Illumina HiSeq X platform. This dataset contains the fastq files. 297 members of the LBC1921 were sequenced using the Illumina HiSeq X platform. This dataset contains the fastq files.	Illumina HiSeq X Ten	297

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