Lothian Birth Cohort 1936 whole genome sequencing study - EGA European Genome-Phenome Archive

Study

Lothian Birth Cohort 1936 whole genome sequencing study

Study ID	Alternative Stable ID	Type
EGAS00001003819		Other

Study Description

1075 members of the Lothian Birth Cohort 1936 (LBC1936) were sequenced using the Illumina HiSeq X platform. The LBC1936 are a relatively healthy cohort of 1091 individuals who underwent cognitive and medical testing at a mean age of 69.5 (SD=0.8) years. They have since undergone four further waves of testing, approximately three years apart.

Study Datasets 3 datasets.

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Dataset ID	Description	Technology	Samples
EGAD00001005478	LBC1921 and LBC1936 GVCFs called with GATK's HaplotypeCaller were combined and subject to variant quality score recalibration. This VCF contains the subset of samples (n = 1068) from the LBC1936 cohort. LBC1921 and LBC1936 GVCFs called with GATK's HaplotypeCaller were combined and subject to variant quality score recalibration. This VCF contains the subset of samples (n = 1068) from the LBC1936 cohort.	Illumina HiSeq X Ten	1068
EGAD00001006414	1075 members of the LBC1936 were sequenced using the Illumina HiSeq X platform. This dataset contains the gvcfs. 1075 members of the LBC1936 were sequenced using the Illumina HiSeq X platform. This dataset contains the gvcfs.	Illumina HiSeq X Ten	1075
EGAD00001008774	1075 members of the LBC1936 were sequenced using the Illumina HiSeq X platform. This dataset contains the paired fastq files. 1075 members of the LBC1936 were sequenced using the Illumina HiSeq X platform. This dataset contains the paired fastq files.	Illumina HiSeq X Ten	1075

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