Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA

1 Dataset 1 Publication

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Dataset ID	Description	Technology	Samples
EGAD00001005316	Next generation RNA-Sequencing (RNA-seq) is a flexible approach that can be applied to e.g. global quantification of transcript expression, the characterization of RNA structure such as splicing patterns and profiling of expressed mutations. Many RNA-seq protocols require up to microgram levels of total RNA input amounts to generate high quality data, and thus remain impractical for the limited starting material amounts typically obtained from rare cell populations, such as those from early developmental stages or from laser micro-dissected clinical samples. Here, we present an assessment of the contemporary ribosomal RNA depletion-based protocols, and identify those that are suitable for inputs as low as 1-10 ng of intact total RNA and 100-500 ng of partially degraded RNA from formalin-fixed paraffin-embedded tissues.	Illumina HiSeq 2500 Illumina MiSeq	3

Publications	Citations
Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA. Haile S, Corbett RD, Bilobram S, Mungall K, Grande BM, Kirk H, Pandoh P, MacLeod T, McDonald H, Bala M, Coope RJ, Moore RA, Mungall AJ, Zhao Y, Morin RD, Jones SJ, Marra MA. PLoS One 14: 2019 e0224578	10