Egyptref: An integrated personal and population-based Egyptian genome reference
|Study ID||Alternative Stable ID||Type|
Study Datasets 7 datasets.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
This is the PacBio long read data used for performing de novo assembly of the EGYPT individual (mapped against GRCh38).
10x Genomics linked read data used in variant phasing and de novo assembly scaffolding for the EGYPT individual (mapped against GRCh38).
|HiSeq X Ten||1|
This is the blood RNA-Seq read data used for expression analysis such as haplotypic expression (mapped against GRCh38).
|Illumina NovaSeq 6000||1|
|HiSeq X Ten||9|
This data set contains for 10 Egyptian individuals the WGS reads mapping to chrM. These were subsequently used for haplogroup assignment.
|HiSeq X Ten||10|
This data set comprises WGS small variants and structural variants called in a cohort of 110 Egyptian individuals (10 individuals have been sequenced as part of this study and 100 are from EGAD00001001372/EGAD00001001380).
This data set contains for 217 Egyptian individuals the amplicon sequencing reads mapping to chrM. These were subsequently used for haplogroup assignment.