Study
Genome-wide somatic variants in CRC (GRCh38)
| Study ID | Alternative Stable ID | Type |
|---|---|---|
| EGAS00001004710 | Whole Genome Sequencing |
Study Description
Study Datasets 1 dataset.
Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001006572 |
The dataset contains somatic variants in 344 colorectal cancer samples. Variants are called with Mutect2 (GRCh38).
Important: VCF-files include also variants, which have been annotated as "str_contraction" and "panel_of_normals".
Please, use only "PASS" variants in studies, which are not microsatellite repeat related. Samples are sequenced
with Novaseq 6000, HiSeq 2000, and HiSeq X Ten instruments (average coverage depth ~30+). The dataset consists of
257 MSS, 58 MSI, 25 MSS IBD, and 4 POLE ... (Show More)
|
344 |
Who archives the data?
