Study

Multi-omics profiling of PSCCE

Study ID Alternative Stable ID Type
EGAS00001004889 Other

Study Description

We performed whole-exome sequencing, RNA sequencing and immunohistochemistry profiling of primary small cell carcinomas of the esophagus.

Study Datasets 3 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001006743
We performed whole-exome sequencing on 46 pairs of PSCCE and matched normal sample. Somatic mutations were called using MuTect2.
46
EGAD00001007002
The aligned bam file of next generation sequencing performed on PSCCE.
Illumina NovaSeq 6000 64
EGAD00001007647
Bam files of unmapped sequencing reads of samples in EGAD00001007002. When utilized in combination with corresponding aligned bam files in dataset EGAD00001007002, they contain all sequencing reads of samples.
Illumina NovaSeq 6000 64

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