Multi-omics profiling of PSCCE - EGA European Genome-Phenome Archive

Study

Multi-omics profiling of PSCCE

Study ID	Alternative Stable ID	Type
EGAS00001004889		Other

We performed whole-exome sequencing, RNA sequencing and immunohistochemistry profiling of primary small cell carcinomas of the esophagus.

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Dataset ID	Description	Technology	Samples
EGAD00001006743	We performed whole-exome sequencing on 46 pairs of PSCCE and matched normal sample. Somatic mutations were called using MuTect2. We performed whole-exome sequencing on 46 pairs of PSCCE and matched normal sample. Somatic mutations were called using MuTect2.		46
EGAD00001007002	The aligned bam file of next generation sequencing performed on PSCCE. The aligned bam file of next generation sequencing performed on PSCCE.	Illumina NovaSeq 6000	64
EGAD00001007647	Bam files of unmapped sequencing reads of samples in EGAD00001007002. When utilized in combination with corresponding aligned bam files in dataset EGAD00001007002, they contain all sequencing reads of samples. Bam files of unmapped sequencing reads of samples in EGAD00001007002. When utilized in combination with corresponding aligned bam files in dataset EGAD00001007002, they contain all sequencing reads of samples.	Illumina NovaSeq 6000	64

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