Study

Single-cell analysis of the multicellular ecosystem in viral carcinogenesis by HTLV-1

Study ID Alternative Stable ID Type
EGAS00001004936 Other

Study Description

Single-cell RNA sequencing (scRNA-seq), antibody-derived tag sequencing (scADT-seq) and T/B-cell receptor (TCR/BCR) sequencing (scTCR/BCR-seq) on peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.

Study Datasets 7 datasets.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001007013
Single-cell B-cell receptor sequencing (scBCR-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.
Illumina NovaSeq 6000 48
EGAD00001007014
Single-cell T-cell receptor sequencing (scTCR-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.
Illumina NovaSeq 6000 48
EGAD00001007015
Single-cell RNA sequencing (scRNA-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.
Illumina NovaSeq 6000 48
EGAD00001007016
Whole exome sequencing (WES) data of peripheral blood mononuclear cells (PBMCs) obtained from 2 ATL patients (3 samples).
HiSeq X Ten 3
EGAD00001007017
Single-cell antibody-derived tag sequencing (scADT-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 30 ATL patients (34 samples including 4 sequential ones), 11 HTLV-1-infected asymptomatic carriers, and 4 healthy donors.
Illumina NovaSeq 6000 48
EGAD00001007018
Bulk RNA sequencing (RNA-seq) data of peripheral blood mononuclear cells (PBMCs) obtained from 7 ATL patients (9 samples) and 9 HTLV-1-infected asymptomatic carriers.
HiSeq X Ten 18
EGAD00001007031
Targeted capture sequencing data of peripheral blood mononuclear cells (PBMCs) obtained from 4 ATL patients (6 samples) and 10 HTLV-1-infected asymptomatic carriers.
HiSeq X Ten 15

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