Study

Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing

Study ID Alternative Stable ID Type
EGAS00001005401 Other

Study Description

Study Datasets 3 datasets.

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Dataset ID Description Technology Samples
EGAD00001007794
scGBS is a single-cell sequencing-based methodology to haplotype and copy-number profile single cells. Genomic size and complexity is reduced through restriction enzyme digestion and DNA is genotyped through sequencing of the restriction fragments. scGBS data serves as the input for haplarithmisis, an algorithm we previously developed for SNP array-based single-cell haplotyping (Zamani Esteki et al., 2015). We established technical parameters and developed an analysis pipeline enabling accurate ... (Show More)
Illumina HiSeq 2500,NextSeq 500 49
EGAD00010002168
HapMap samples for haplotyping and copy-number profiling via SNP array
Illumina HumanCytoSNP-12 v2.1 11
EGAD00010002169
PGT samples for haplotyping and copy-number profiling via SNP array
Illumina HumanCytoSNP-12 v2.1 39

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