Single cell RNA sequencing of colorectal cancer patients (KUL3/KUL5)

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001008584	All libraries were sequenced on Illumina HiSeq4000 until sufficient saturation was reached.	Illumina HiSeq 4000	9
EGAD00001008585	All libraries were sequenced on Illumina NextSeq or NovaSeq6000 until sufficient saturation was reached.	unspecified	26

Publications	Citations
Single-cell and bulk transcriptome sequencing identifies two epithelial tumor cell states and refines the consensus molecular classification of colorectal cancer. Joanito I, Wirapati P, Zhao N, Nawaz Z, Yeo G, Lee F, Eng CLP, Macalinao DC, Kahraman M, Srinivasan H, Lakshmanan V, Verbandt S, Tsantoulis P, Gunn N, Venkatesh PN, Poh ZW, Nahar R, Oh HLJ, Loo JM, Chia S, Cheow LF, Cheruba E, Wong MT, Kua L, Chua C, Nguyen A, Golovan J, Gan A, Lim WJ, Guo YA, Yap CK, Tay B, Hong Y, Chong DQ, Chok AY, Park WY, Han S, Chang MH, Seow-En I, Fu C, Mathew R, Toh EL, Hong LZ, Skanderup AJ, DasGupta R, Ong CJ, Lim KH, Tan EKW, Koo SL, Leow WQ, Tejpar S, Prabhakar S, Tan IB. Nat Genet 54: 2022 963-975	300
Neuro-Mesenchymal Interaction Mediated by a β2-Adrenergic Nerve Growth Factor Feedforward Loop Promotes Colorectal Cancer Progression. Kobayashi H, Iida T, Ochiai Y, Malagola E, Zhi X, White RA, Qian J, Wu F, Waterbury QT, Tu R, Zheng B, LaBella JS, Zamechek LB, Ogura A, Woods SL, Worthley DL, Enomoto A, Wang TC. Cancer Discov 15: 2025 202-226	35
Metastasis of colon cancer requires Dickkopf-2 to generate cancer cells with Paneth cell properties. Shin JH, Park J, Lim J, Jeong J, Dinesh RK, Maher SE, Kim J, Park S, Hong JY, Wysolmerski J, Choi J, Bothwell ALM. Elife 13: 2024 RP97279	7
CIA: unveiling cellular identities with cluster-independent annotation in single-cell RNA sequencing data for comprehensive cell type characterization and exploration. Ferrari I, Battistella M, Vincenti F, Gobbini A, Marini F, Notarbartolo S, Costanza J, Biffo S, Grifantini R, Abrignani S, Galeota E. BMC Bioinformatics 27: 2025 38	0
Intratumoral heterogeneity in microsatellite instability status at single-cell resolution. Anthony H, Seoighe C. iScience 29: 2026 114860	0