Deep whole genome sequencing identifies recurrent genomic alterations in breast cancer cell lines and patient derived xenograft models

Study ID Alternative Stable ID Type
EGAS00001006285 Other

Study Description

Breast cancer cell lines (BCCLs) and patient-derived xenografts (PDX) are the most frequently used models in breast cancer research. Despite their widespread usage, genome sequencing of these models is incomplete, with previous studies only focusing on targeted gene panels, whole exome or shallow whole genome sequencing. Here we describe deep whole genome sequencing (WGS) of commonly used BCCL and PDX models using the Illumina X10 platform with an average ~ 60x coverage.

Study Datasets 1 dataset.

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Dataset ID Description Technology Samples
whole genome sequencing of six commonly used breast cancer cell lines and six patient derived xenograft models
HiSeq X Ten 14

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