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Whole genome sequencing of multifocal small intestinal neuroendocrine tumors

Type: Whole Genome Sequencing
Archiver: European Genome-phenome Archive (EGA)

1 Dataset 2 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001008831	This dataset includes whole genome sequences of 75 synchronous primary tumors, 15 metastases, and corresponding normal samples from 13 patients with multifocal ileal neuroendocrine tumors. The whole genomes were sequenced on Illumina HiSeq X Ten to generate 151-bp paired-end reads, which were aligned to GRCh38/hg38 reference assembly using BWA–MEM and duplicate-marked with Picard tools. GATK was utilized for base score recalibration and local indel re-alignments. The whole genomes are provided as CRAM files.	HiSeq X Ten	108

Publications	Citations
Whole genome sequencing reveals the independent clonal origin of multifocal ileal neuroendocrine tumors. Mäkinen N, Zhou M, Zhang Z, Kasai Y, Perez E, Kim GE, Thirlwell C, Nakakura E, Meyerson M. Genome Med 14: 2022 82	17
Characterization of tumor-associated microbiome in multifocal small intestinal neuroendocrine tumors (SI-NETs). Lee IT, Dohlman A, Gao T, Zhang Z, Kasai Y, Kim GE, Thirlwell C, Nakakura E, Meyerson M, Mäkinen N. ESMO Gastrointest Oncol 9: 2025 100229	0