Shot-gun stool metagenomics and colorectal cancer risk.

Study ID Alternative Stable ID Type
EGAS00001007025 Other

Study Description

This study aims to identify metagenomics biomarkers in colorectal cancer (CRC). The study includes 156 samples of shot-gun stool metagenomics, corresponding to 51 patients with CRC, 54 patients with high-risk adenoma, and 51 healthy controls. The sequencing libraries were prepared with 2 µg of total DNA using the Nextera XT DN Sample Prep Kit (Illumina, San Diego, CA, USA). Sequencing was performed at 150 nucleotides, paired-end, using an Illumina HiSeq 4000 platform.

Study Datasets 1 dataset.

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Dataset ID Description Technology Samples
156 samples of shot-gun gut metagenomics, corresponding to 51 patients with CRCm 54 patients with adenoma, and 51 healthy controls
Illumina HiSeq 4000 2

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