Covid19 WGS Variant analysis

Study ID Alternative Stable ID Type
EGAS00001007082 Whole Genome Sequencing

Study Description

The Samples were collected from Saint James's Hospital, Dublin and after informed consent Extracted Genomic DNA samples were prepared and sequenced using the Automated Illumina TruSeq PCR-free methodology. The raw reads aligned with GRCh38 human genome and variant calling has been accomplished by GATK. The resulted GVCF and vcf has been submitted as variant analysis.

Study Datasets 1 dataset.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
483 samples were collected for WGS and aligned with GRCh38 human genome. The variants were called using GATK (Sentieon v. 201808.03) in GVCF and VCF format.

Who archives the data?

There are no publications available