Low-coverage whole-genome sequencing of cancer and healthy plasma circulating DNA

2 Datasets 2 Publications

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD00001011817	Plasma samples from patients with melanoma (stage II/III/IV) and breast cancer (stage IV) as well as healthy individuals were subjected to low-coverage whole-genome sequencing (less than 10x average depth). This dataset contains raw fastq files from 39 breast cancer, 127 melanoma and 42 healthy control plasma samples.	Illumina NovaSeq 6000	208
EGAD50000000804	Plasma samples from healthy individuals were subjected to low-coverage whole-genome sequencing (less than 10x average depth). This dataset contains raw fastq files from 18 healthy control plasma samples.	Illumina NovaSeq 6000	18

Publications	Citations
The landscape of cell-free mitochondrial DNA in liquid biopsy for cancer detection. van der Pol Y, Moldovan N, Ramaker J, Bootsma S, Lenos KJ, Vermeulen L, Sandhu S, Bahce I, Pegtel DM, Wong SQ, Dawson SJ, Chandrananda D, Mouliere F. Genome Biol 24: 2023 229	10
Unravelling mutational signatures with plasma circulating tumour DNA. Hollizeck S, Wang N, Wong SQ, Litchfield C, Guinto J, Ftouni S, Rebello R, Kanwal S, Dong R, Grimmond S, Sandhu S, Mileshkin L, Tothill RW, Chandrananda D, Dawson SJ. Nat Commun 15: 2024 9876	1