Need Help?

Nanopore whole genome sequencing data of HG002

Data generated from single cell, 10 cells, and bulk samples of HG002.

Type: Whole Genome Sequencing
Archiver: European Genome-Phenome Archive (EGA)

1 Dataset 1 Publication

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD50000000787	This dataset contains long-read whole-genome sequencing (lrWGS) data from 14 samples. Five lrWGS data are from single-cell (sc, sc_2, sc_3), multi-cell (mc, 10 cells), and bulk samples of HG002. The remaining nine lrWGS data are from two preimplantation genetic testing (PGT) families, including four from blood bulk DNA of the parental pairs and five from trophectoderm biopsies of two embryos from one family and three embryos from another family. The data are provided in raw FASTQ format and were generated using the PromethION device from Oxford Nanopore Technologies.	PromethION	14

Publications	Citations
Long-read whole-genome sequencing-based concurrent haplotyping and aneuploidy profiling of single cells. Zhao Y, Tsuiko O, Jatsenko T, Peeters G, Souche E, Geysens M, Dimitriadou E, Vanhie A, Peeraer K, Debrock S, Van Esch H, Vermeesch JR. Nucleic Acids Res 53: 2025 gkaf247	0