RIP-seq of SF3B4 binding RNA fragments

There are 2 paired samples. The project aims to characterize SF3B4 binding RNA fragments within liver organoids to understand its role in splicing regulation

Type: Transcriptome Sequencing
Archiver: European Genome-Phenome Archive (EGA)

1 Dataset 1 Publication

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD50000001625	The dataset contains 18 samples. It includs 12 paired whole genome sequencing, and 2 matched short read and long read RNA sequencing of liver organoids, 2 paired RIP RNA sequencing samples. All the experiments were performed on Illumina platform with raw reads stored in fastq format or bam format.	Illumina NovaSeq 6000 Illumina NovaSeq X	18

Publications	Citations
Genome-wide CRISPR screen identifies splicing factor SF3B4 in driving hepatocellular carcinoma. Guo Y, Xu M, Xue H, Ding X, Wong AM, Lin N, Pu D, Wong AM, Wang X, Zhao H, Wong N. Sci Adv 11: 2025 eadw7181	0