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Axes of Biological Variation in Diffuse Large B-Cell Lymphoma

To explore the DLBCL molecular and genetic environment, we conducted genome-wide NGS sequencing on 103 DLBCL biopsy samples (named as Cornell-NCI cohort) with NGS platforms, including bulk WES, etc. The raw fastq files of the bulk WES were deposited on the EGA for user access. For additional information regarding the genomic data associated with the study, please also see the paper companion website at https://llmpp.ccr.cancer.gov/local/DLBCL_singlecell/

Type: Cancer Genomics
Archiver: European Genome-phenome Archive (EGA)

3 Datasets 1 Publication

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD50000001747	Paired-read fastq files were derived from standard Illumina WES NGS sequencing for 103 DLBCL biopsy samples. This is one of three datasets associated with the multi-platform NGS sequencing efforts of the Cornell-NCI DLBCL genomic study.	Illumina NovaSeq 6000	103
EGAD50000002489	Raw read counts and normalized read counts for each gene	Illumina NovaSeq 6000	103
EGAD50000002490	The feature-counting outputs from Cellrange-arc-count pipeline contain information at the single cell level, jointly for both scRNA-Seq and scATAT-Seq on 103 DLBCL samples and 3 normal controls (Please note that sc-40 only has scRNA-Seq data without scATAC-Seq). These files can be used as the input files for further downstream analysis software (e.g. Seurat Package). Moreover, a matrix of single-cell barcodes and associated cell biological types (used in the study) is also provided for users’ reference. This dataset is large and split into two parts to facilitate downloads. This dataset is large and split into two parts to facilitate downloads. The Linux command line of "tar -xvf xxxx_PART1.gz" should be used to extract the individual files. For additional information regarding the genomic data associated with the study, please also see the paper companion website at https://llmpp.ccr.cancer.gov/local/DLBCL_singlecell/	Illumina NovaSeq 6000	103

Publications	Citations
Axes of biological variation in diffuse large B cell lymphoma. Wang B, Wright G, Enssle JC, Yu X, Phelan JD, Yang Y, Shaffer A, Ruiz AE, Huang DW, Coulibaly Z, Kelly M, Tran B, Pittaluga S, Roschewski M, Wilson WH, Oellerich T, Inghirami G, Staudt LM. Cancer Cell 44: 2026 567-585.e12	0