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Improving Variant Detection and Transcriptomic Alignment Accuracy for Acute Lymphoblastic Leukaemia Patients: A Pan-Genome Graph Approach

Construct a Acute Lymphoblastic Leukaemia specific spliced pangenome graph anchored to the GRCh38 reference genome and enriched with transcript annotations and variants associated with ALL to enhances transcriptomic alignment accuracy and variant detection in ALL patients

Type: RNASeq
Archive: European Genome-phenome Archive (EGA)

1 Dataset

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID	Description	Technology	Samples
EGAD50000002606	Dataset contains RNA-sequencing data (fastq files) from 10 Acute Lymphoblastic Leukaemia (ALL) patients. Patient samples (bone marrow or peripheral blood) were taken at diagnosis. mRNA was extracted from blast cells and underwent paired-end sequencing (75bp) using the illumina HiSeq platform.	Illumina HiSeq 2000	10