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Amplicon based re-sequencing of multi-region PDAC samples

Multi-region tumor samples were cut from frozen sections or FFPEs and reviewed from microdissection and H&E staining in order to select ones with high cellularity. DNA extraction was done using DNeasy Blood & Tissue Kits for frozen samples following the manufacturer’s guideline. Extracted DNAs were processed on an Illumina HiSeq 2500 in a paired end mode (100x100) using a custom targeted panel based on the list of all unique somatic mutations from the original WES data by the Integrated Genomics Operation (IGO) at Memorial Sloan Kettering Cancer Center (New York, NY).

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BC Cancer, part of the Provincial Health Services Authority - Data Access Policy

Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000239 Resequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000091165 bam 4.4 GB
EGAF50000091166 bam 3.4 GB
EGAF50000091167 bam 4.6 GB
EGAF50000091168 bam 4.1 GB
EGAF50000091169 bam 5.1 GB
EGAF50000091170 bam 4.6 GB
EGAF50000091171 bam 4.3 GB
EGAF50000091172 bam 4.4 GB
EGAF50000091173 bam 5.3 GB
EGAF50000091174 bam 3.3 GB
EGAF50000091175 bam 4.6 GB
EGAF50000091176 bam 1.4 GB
EGAF50000091177 bam 3.5 GB
EGAF50000091178 bam 5.3 GB
EGAF50000091179 bam 3.6 GB
EGAF50000091180 bam 3.9 GB
EGAF50000091181 bam 2.7 GB
EGAF50000091182 bam 753.4 MB
EGAF50000091183 bam 4.4 GB
EGAF50000091184 bam 4.3 GB
EGAF50000091185 bam 6.2 GB
EGAF50000091186 bam 3.1 GB
EGAF50000091187 bam 6.2 GB
EGAF50000091188 bam 3.6 GB
EGAF50000091189 bam 5.3 GB
EGAF50000091190 bam 11.7 GB
EGAF50000091191 bam 15.5 GB
EGAF50000091192 bam 11.7 GB
EGAF50000091193 bam 2.8 GB
EGAF50000091194 bam 3.4 GB
EGAF50000091195 bam 1.1 GB
EGAF50000091196 bam 16.7 GB
EGAF50000091197 bam 1.7 GB
EGAF50000091198 bam 11.2 GB
EGAF50000091199 bam 12.7 GB
EGAF50000091200 bam 12.7 GB
EGAF50000091201 bam 7.7 GB
EGAF50000091202 bam 13.3 GB
EGAF50000091203 bam 930.1 MB
EGAF50000091204 bam 7.4 GB
EGAF50000091205 bam 7.3 GB
EGAF50000091206 bam 9.4 GB
EGAF50000091207 bam 10.0 GB
EGAF50000091208 bam 14.0 GB
EGAF50000091209 bam 18.0 GB
EGAF50000091210 bam 15.2 GB
EGAF50000091211 bam 16.3 GB
EGAF50000091212 bam 9.3 GB
EGAF50000091213 bam 18.9 GB
EGAF50000091214 bam 17.8 GB
EGAF50000091215 bam 39.5 GB
EGAF50000091216 bam 16.2 GB
EGAF50000091217 bam 11.5 GB
EGAF50000091218 bam 2.4 GB
EGAF50000091219 bam 9.3 GB
EGAF50000091220 bam 5.4 GB
EGAF50000091221 bam 9.1 GB
EGAF50000091222 bam 8.1 GB
EGAF50000091223 bam 5.8 GB
EGAF50000091224 bam 19.4 GB
EGAF50000091225 bam 6.5 GB
EGAF50000091226 bam 3.6 GB
EGAF50000091227 bam 11.2 GB
EGAF50000091228 bam 20.0 GB
EGAF50000091229 bam 5.7 GB
EGAF50000091230 bam 20.7 GB
EGAF50000091231 bam 2.2 GB
EGAF50000091232 bam 6.5 GB
EGAF50000091233 bam 1.4 GB
EGAF50000091234 bam 6.3 GB
EGAF50000091235 bam 4.1 GB
EGAF50000091236 bam 7.9 GB
EGAF50000091237 bam 1.9 GB
EGAF50000091238 bam 16.8 GB
EGAF50000091239 bam 5.3 GB
EGAF50000091240 bam 6.0 GB
EGAF50000091241 bam 16.0 GB
EGAF50000091242 bam 13.7 GB
EGAF50000091243 bam 3.9 GB
EGAF50000091244 bam 16.9 GB
EGAF50000091245 bam 1.4 GB
EGAF50000091246 bam 8.4 GB
EGAF50000091247 bam 6.0 GB
EGAF50000091248 bam 7.6 GB
EGAF50000091249 bam 6.7 GB
EGAF50000091250 bam 10.6 GB
EGAF50000091251 bam 18.8 GB
EGAF50000091252 bam 2.0 GB
EGAF50000091253 bam 17.9 GB
EGAF50000091254 bam 8.8 GB
EGAF50000091255 bam 14.4 GB
EGAF50000091256 bam 10.4 GB
EGAF50000091257 bam 4.8 GB
EGAF50000091258 bam 1.6 GB
EGAF50000091259 bam 1.6 GB
EGAF50000091260 bam 7.8 GB
EGAF50000091261 bam 4.3 GB
EGAF50000091262 bam 11.0 GB
EGAF50000091263 bam 13.6 GB
EGAF50000091264 bam 4.6 GB
EGAF50000091265 bam 5.9 GB
EGAF50000091266 bam 6.3 GB
EGAF50000091267 bam 1.7 GB
EGAF50000091268 bam 8.6 GB
EGAF50000091269 bam 13.4 GB
EGAF50000091270 bam 8.7 GB
EGAF50000091271 bam 11.4 GB
EGAF50000091272 bam 1.8 GB
EGAF50000091273 bam 11.9 GB
EGAF50000091274 bam 6.0 GB
EGAF50000091275 bam 9.8 GB
EGAF50000091276 bam 3.2 GB
EGAF50000091277 bam 2.9 GB
EGAF50000091278 bam 3.5 GB
EGAF50000091279 bam 3.4 GB
EGAF50000091280 bam 4.0 GB
EGAF50000091281 bam 3.3 GB
EGAF50000091282 bam 3.7 GB
EGAF50000091283 bam 3.6 GB
EGAF50000091284 bam 1.4 GB
EGAF50000091285 bam 4.3 GB
EGAF50000091286 bam 4.2 GB
EGAF50000091287 bam 3.9 GB
EGAF50000091288 bam 4.0 GB
EGAF50000091289 bam 3.4 GB
EGAF50000091290 bam 2.3 GB
EGAF50000091291 bam 4.0 GB
EGAF50000091292 bam 3.1 GB
EGAF50000091293 bam 1.5 GB
EGAF50000091294 bam 3.4 GB
EGAF50000091295 bam 3.7 GB
EGAF50000091296 bam 4.2 GB
EGAF50000091297 bam 3.2 GB
EGAF50000091298 bam 2.4 GB
EGAF50000091299 bam 3.6 GB
EGAF50000091300 bam 4.4 GB
EGAF50000091301 bam 1.3 GB
EGAF50000091302 bam 4.6 GB
EGAF50000091303 bam 4.7 GB
EGAF50000091304 bam 3.8 GB
EGAF50000091305 bam 3.7 GB
EGAF50000091306 bam 3.9 GB
EGAF50000091307 bam 3.7 GB
EGAF50000091308 bam 5.0 GB
EGAF50000091309 bam 11.8 GB
EGAF50000091310 bam 6.8 GB
EGAF50000091311 bam 1.4 GB
EGAF50000091312 bam 7.2 GB
EGAF50000091313 bam 3.3 GB
EGAF50000091314 bam 3.1 GB
EGAF50000091315 bam 4.0 GB
EGAF50000091316 bam 2.5 GB
EGAF50000091317 bam 5.2 GB
EGAF50000091318 bam 4.5 GB
EGAF50000091319 bam 3.4 GB
EGAF50000091320 bam 3.1 GB
EGAF50000091321 bam 3.3 GB
EGAF50000091322 bam 4.4 GB
EGAF50000091323 bam 4.6 GB
EGAF50000091324 bam 4.3 GB
EGAF50000091325 bam 1.7 GB
EGAF50000091326 bam 5.9 GB
EGAF50000091327 bam 4.0 GB
EGAF50000091328 bam 3.6 GB
EGAF50000091329 bam 6.2 GB
EGAF50000091330 bam 3.6 GB
EGAF50000091331 bam 3.9 GB
EGAF50000091332 bam 3.5 GB
EGAF50000091333 bam 3.6 GB
EGAF50000091334 bam 3.7 GB
EGAF50000091335 bam 5.3 GB
EGAF50000091336 bam 3.6 GB
EGAF50000091337 bam 7.0 GB
EGAF50000091338 bam 4.8 GB
EGAF50000091339 bam 4.4 GB
EGAF50000091340 bam 3.2 GB
EGAF50000091341 bam 5.0 GB
EGAF50000091342 bam 3.5 GB
EGAF50000091343 bam 3.7 GB
EGAF50000091344 bam 4.8 GB
EGAF50000091345 bam 3.0 GB
EGAF50000091346 bam 4.2 GB
EGAF50000091347 bam 1.2 GB
EGAF50000091348 bam 3.2 GB
EGAF50000091349 bam 3.3 GB
EGAF50000091350 bam 8.7 GB
EGAF50000091351 bam 3.2 GB
EGAF50000091352 bam 3.0 GB
EGAF50000091353 bam 1.1 GB
EGAF50000091354 bam 4.3 GB
EGAF50000091355 bam 4.3 GB
EGAF50000091356 bam 4.8 GB
EGAF50000091357 bam 4.9 GB
EGAF50000091358 bam 4.3 GB
EGAF50000091359 bam 3.9 GB
EGAF50000091360 bam 4.0 GB
EGAF50000091361 bam 3.2 GB
EGAF50000091362 bam 5.0 GB
EGAF50000091363 bam 5.6 GB
EGAF50000091364 bam 3.3 GB
EGAF50000091365 bam 3.1 GB
EGAF50000091366 bam 1.4 GB
EGAF50000091367 bam 4.4 GB
EGAF50000091368 bam 3.0 GB
EGAF50000091369 bam 3.4 GB
EGAF50000091370 bam 4.1 GB
EGAF50000091371 bam 3.5 GB
EGAF50000091372 bam 5.0 GB
EGAF50000091373 bam 8.1 GB
EGAF50000091374 bam 4.9 GB
EGAF50000091375 bam 3.3 GB
EGAF50000091376 bam 2.9 GB
EGAF50000091377 bam 2.6 GB
EGAF50000091378 bam 2.5 GB
EGAF50000091379 bam 2.3 GB
EGAF50000091380 bam 3.6 GB
EGAF50000091381 bam 2.6 GB
EGAF50000091382 bam 1.7 GB
EGAF50000091383 bam 2.5 GB
EGAF50000091384 bam 2.3 GB
EGAF50000091385 bam 2.0 GB
EGAF50000091386 bam 4.3 GB
EGAF50000091387 bam 2.5 GB
EGAF50000091388 bam 3.1 GB
EGAF50000091389 bam 2.3 GB
EGAF50000091390 bam 2.3 GB
EGAF50000091391 bam 2.4 GB
EGAF50000091392 bam 2.0 GB
EGAF50000091393 bam 1.6 GB
EGAF50000091394 bam 1.7 GB
EGAF50000091395 bam 478.5 MB
EGAF50000091396 bam 2.6 GB
EGAF50000091397 bam 457.2 MB
EGAF50000091398 bam 569.9 MB
EGAF50000091399 bam 465.3 MB
EGAF50000091400 bam 915.7 MB
EGAF50000091401 bam 1.0 GB
EGAF50000091402 bam 652.8 MB
EGAF50000091403 bam 2.2 GB
EGAF50000091404 bam 2.0 GB
EGAF50000091405 bam 2.7 GB
EGAF50000091406 bam 2.1 GB
EGAF50000091407 bam 3.0 GB
EGAF50000091408 bam 2.5 GB
244 Files (1.4 TB)