DAC
Glioma Genomics Committee
| Dac ID | Contact Person | Access Information | |
|---|---|---|---|
| EGAC00001000153 | Joseph Costello | jcostello [at] cc [dot] ucsf [dot] edu | No additional information is available |
This DAC controls 17 datasets:
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00001000714 | NA | 102 | |
| EGAD00001000777 | Dataset contains MeDIP-Seq, MRE-Seq and H3K4me3 ChIP-Seq data on 5 GBM patients. | 16 | |
| EGAD00001001305 | Dataset contains WES data from 3 astrocytoma patients: blood as control, primary tumor and recurrent tumor | 9 | |
| EGAD00001001359 | Dataset contains Exome-seq and RNA-seq from 2 GBM patients, as well as RNA-seq from the derived cultured cells (GNS). | 6 | |
| EGAD00001001613 | NA | 10 | |
| EGAD00001001614 | NA | 26 | |
| EGAD00001001615 | NA | 10 | |
| EGAD00001001616 | NA | 2 | |
| EGAD00001003763 | 15 whole exome sequencing datasets from five patients. Data is provided as bam files. Libraries were generated using the SeqCap EZ Exome v3.0 kit and sequenced on an Illumina sequencer | 15 | |
| EGAD00001003764 | Four RNA-sequencing datasets from two patients with initial low-grade glioma and copy number alteration at IDH1 upon recurrence. Data is provided as bam files. | 4 | |
| EGAD00001003795 | This dataset includes Nimblegen SeqCap EZ Exome v3 data for each lesion of three patients with multicentric glioma. For two patients, each lesion was sequenced along with whole blood. For a third patient, 3 pieces from the right lesion and 4 pieces from the left were sequenced along with whole blood. In each case BAM files that have been aligned with BWA mem alignment are available. | 15 | |
| EGAD00001005221 | NA | 236 | |
| EGAD00001005222 | NA | 160 | |
| EGAD00001005435 | This dataset contains 9 RNA-seq BAM files. RNA was derived from TERT promoter mutant GBM cell lines and sequenced on an Illumina HiSeq4000 sequencer with paired-end reads and an average read length of 50 base pairs. Reads were aligned with TopHat (v2.0.14) using a GENCODE V19 transcriptome-guided alignment. | 9 | |
| EGAD00010000827 | Illumina Infinium 450K array data | 1 | |
| EGAD00010000829 | Illumina Infinium 450K array data | 70 | |
| EGAD00010001408 | Illumina Infinium 450K array data | Illumina 450K | 34 |
