| EGAD00001001390 |
Human monocytes from a healthy male blood donor were obtained after written informed consent and anonymised. Library preparation was performed essentially as described in the “Whole‐genome Bisulfite Sequencing for Methylation Analysis (WGBS)” protocol as released by Illumina. The library was sequenced on an Illumina HiSeq2500 using 101 bp paired-end sequencing. Read mapping was done with BWA. |
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1 |
| EGAD00001001865 |
Sequence Data of total RNA, miRNA, WGB, mRNA, NOMe, Chip (H3K27ac,H3K27me, H3K36me3, H3K4me1, H3K4me3, H3K9me3, Input)Short Desrciption: Epigenetic profiling of human CD4+ memory T cells reveals their proliferative history and argues in favor of a progressive differentiation model driven by epigenetically controlled master regulators. |
Illumina HiSeq 2000 |
21 |
| EGAD00001002201 |
Data for paper: Epigenetic dynamics of monocyte to macrophage differentiation with Chip Seq, NOMe, mRNA, total RNA, noncoding RNA, whole genome bisulfite seq, |
Illumina HiSeq 2000 |
8 |
| EGAD00001002255 |
Sequencing Data for DEEP Paper: "reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4+ memory T-Cells"
Sample: 51_Hf01_BlCM_Ct (human, female, Blood, CD4+ central memory cell, normal control)
Sequencing types are: total RNA, Whole Genome Bisulfite, ChipSeq (H3K27ac, H3K9me3, H3k36me3, H3K4me1, H3k27me3, H3K4me3, Input), reChipSeq (H3K27me3, H3K4me3) |
|
1 |
| EGAD00001002527 |
DEEP (German Epigenome Project) sequence data of following samples (Sequencing Types: Chip-Seq, WGBS-Seq, RNA-Seq, sncRNA-Seq, NOMe-Se, DNase-Seq):
41_Hf01_LiHe_Ct, 41_Hf02_LiHe_Ct, 41_Hf03_LiHe_Ct, 01_HepG2_LiHG_Ct1, 01_HepG2_LiHG_Ct2, 01_HepaRG_LiHR_D31, 01_HepaRG_LiHR_D32, 01_HepaRG_LiHR_D33, 43_Hm01_BlMo_Ct, 43_Hm03_BlMo_Ct, 43_Hm05_BlMo_Ct, 43_Hm03_BlMa_Ct, 43_Hm05_BlMa_Ct, 43_Hm03_BlMa_TO, 43_Hm05_BlMa_TO, 43_Hm03_BlMa_TE, 43_Hm05_BlMa_TE, 51_Hf01_BlCM_Ct, 51_Hf03_BlCM_Ct, 51_Hf04_BlCM_Ct, 51_Hf02_BlCM_Ct, 51_Hf05_BlCM_Ct, 51_Hf06_BlCM_Ct, 51_Hf06_BlCM_T1, 51_Hf06_BlCM_T2, 51_Hf03_BlEM_Ct, 51_Hf04_BlEM_Ct, 51_Hf02_BlEM_Ct, 51_Hf05_BlEM_Ct, 51_Hf06_BlEM_Ct, 51_Hf06_BlEM_T1, 51_Hf06_BlEM_T2, 51_Hf03_BlTN_Ct, 51_Hf04_BlTN_Ct, 51_Hf02_BlTN_Ct, 51_Hf05_BlTN_Ct, 51_Hf06_BlTN_Ct, 51_Hf06_BlTN_T1, 51_Hf06_BlTN_T2, 51_Hf07_BmTM4_Ct, 51_Hf08_BlTM4_Ct, 51_Hf08_BmTM4_SP1, 51_Hf08_BmTM4_SP2, 51_Hf05_BlTA_Ct, 44_Mm01_WEAd_C2, 44_Mm03_WEAd_C2, 44_Mm02_WEAd_C2, 44_Mm07_WEAd_C2, 44_Mm04_WEAd_C1, 44_Mm05_WEAd_C1 |
Illumina HiSeq 2000,Illumina HiSeq 2500 |
46 |
| EGAD00001002735 |
mRNA, total RNA, small noncoding RNA, NOMe-Seq and DNase-Seq data from following samples (not every Sequencing Type for every sample):
01_HepG2_LiHG_Ct1
41_Hf01_LiHe_Ct
41_Hf02_LiHe_Ct
41_Hf03_LiHe_Ct
51_Hf03_BlCM_Ct
51_Hf04_BlCM_Ct
51_Hf03_BlEM_Ct
51_Hf04_BlEM_Ct
51_Hf03_BlTN_Ct
51_Hf04_BlTN_Ct
Metadata available at deep.dkfz.de |
Illumina HiSeq 2000,Illumina HiSeq 2500 |
10 |
| EGAD00001003259 |
Regions of common inter-individual DNA methylation differences in human monocytes – potential function and genetic basis
WGBS Data of Samples:
43_Hm03_BlMo_Ct, 43_Hm02_BlMo_Ct, 43_Hm05_BlMo_Ct, 43_Hm01_BlMo_Ct
For details about sequencing or sample metadata check http://deep.dkfz.de/ |
Illumina HiSeq 2000 |
4 |
| EGAD00001003974 |
Raw data files for the German Epigenome Project (DEEP), IHEC/EpiRR submission of 2017.
metadata available at: http://deep.dkfz.de/#/experiments |
Illumina HiSeq 2000,Illumina HiSeq 2500,NextSeq 500 |
17 |
| EGAD00001005953 |
part of the DEEP project results resulted in the publication of 'Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters', Epigenetics & Chromatin (2018), Fatemeh et al., DOI: 10.1186/s13072-018-0236-7, PMID: 30414612, PMCID: PMC6230222. This dataset contains the subset of DEEP data related to that study. |
Illumina HiSeq 2500 |
1 |
| EGAD00001005954 |
Additional histone modification data, not yet released as part of IHEC, for cell line 01_HepG2_LiHG_Ct1, H3K122ac. |
Illumina HiSeq 2500 |
1 |
| EGAD00010001294 |
Methylation data using 450K |
Illumina 450k |
1128 |
