Dataset

Data for Paper: Combining transcription factor binding affinities with open chromatin data for accurate gene expression prediction

Dataset ID Technology Samples
EGAD00001002735 Illumina HiSeq 2000,Illumina HiSeq 2500 10

Dataset Description

mRNA, total RNA, small noncoding RNA, NOMe-Seq and DNase-Seq data from following samples (not every Sequencing Type for every sample):
01_HepG2_LiHG_Ct1
41_Hf01_LiHe_Ct
41_Hf02_LiHe_Ct
41_Hf03_LiHe_Ct
51_Hf03_BlCM_Ct
51_Hf04_BlCM_Ct
51_Hf03_BlEM_Ct
51_Hf04_BlEM_Ct
51_Hf03_BlTN_Ct
51_Hf04_BlTN_Ct

Metadata available at deep.dkfz.de

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DEEP (Deutsches Epigenom Programm) DAC
Contact person: Jörn Walter
Email: j [dot] walter [at] mx [dot] uni-saarland [dot] de
More details: EGAC00001000179

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