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IHEC DEEP Release August 2016

Additional sequencing data for the German IHEC contribution (DEEP,, This is the additional data released in August 2016. Contains datatypes: - Whole Genome Bisulfite sequencing - ChipSeq (H3K27ac, H3K27me3, H3K36me3, H3K4me1, H3K4me3, H3K9me3, Input) - tRNA – not unmapped - mRNA - snRNA - Dnase Hypersensitive sites - RRBS - NOMe

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001002527 Illumina HiSeq 2000 Illumina HiSeq 2500 46
EGAD00001002735 Illumina HiSeq 2000 Illumina HiSeq 2500 10
EGAD00001003259 Illumina HiSeq 2000 4
EGAD00001005953 Illumina HiSeq 2500 1
Publications Citations
CRUP: a comprehensive framework to predict condition-specific regulatory units.
Genome Biol 20: 2019 227
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications.
Epigenetics Chromatin 13: 2020 20
CpG content-dependent associations between transcription factors and histone modifications.
PLoS One 16: 2021 e0249985
Widespread effects of DNA methylation and intra-motif dependencies revealed by novel transcription factor binding models.
Nucleic Acids Res 51: 2023 e95