Need Help?

All available datasets of DEEP

All available datasets of DEEP. There are several Reference Epigenomes available. For metadata check out www.deep.dkfz.de One reference epigenome represents a set of 6 ChIP-Seqs, WGBS, RNA-Seq, smallRNA-Seq and sometimes DNase1 and/or NOME-Seq.

Click on a Dataset ID in the table below to learn more, and to find out who to contact about access to these data

Dataset ID Description Technology Samples
EGAD00001001865 Illumina HiSeq 2000 21
EGAD00001002201 Illumina HiSeq 2000 8
EGAD00001002255 1
EGAD00001002735 Illumina HiSeq 2000 Illumina HiSeq 2500 10
Publications Citations
Epigenetic dynamics of monocyte-to-macrophage differentiation.
Epigenetics Chromatin 9: 2016 33
46
Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function.
Epigenetics Chromatin 10: 2017 37
10
Quantitative comparison of within-sample heterogeneity scores for DNA methylation data.
Nucleic Acids Res 48: 2020 e46
27