DAC

McGill ECDAC

Dac ID Contact Person Email Access Information
EGAC00001000250 Stephanie Dyke dac [dot] edcc [at] mail [dot] mcgill [dot] ca No additional information is available

This DAC controls 27 datasets:

Dataset ID Description Technology Samples
EGAD00001001285 McGill EMC Release 4 in tissue "Brodmann (1909) area 44" Illumina HiSeq 2500; 1
EGAD00001001296 McGill EMC Release 4 for assay "H3K4me1" Illumina HiSeq 2500; 41
EGAD00001001294 McGill EMC Release 4 for assay "H3K27me3" Illumina HiSeq 2500; 32
EGAD00001001287 McGill EMC Release 4 in tissue "kidney" Illumina HiSeq 2500; 2
EGAD00001001282 McGill EMC Release 4 in tissue "venous blood" for cell type "Monocyte" Illumina HiSeq 2500; 82
EGAD00001001292 McGill EMC Release 4 for assay "smRNA-seq": Transcriptome profiling by high-throughput sequencing Illumina HiSeq 2500; 6
EGAD00001001293 McGill EMC Release 4 for assay "ChIP-Seq Input" Illumina HiSeq 2500; 52
EGAD00001001290 McGill EMC Release 4 for assay "RNA-seq": Transcriptome profiling by high-throughput sequencing Illumina HiSeq 2500; 261
EGAD00001001280 McGill EMC Release 4 in tissue "venous blood" for cell type "CD4-positive, alpha-beta T cell" Illumina HiSeq 2500; 40
EGAD00001001298 McGill EMC Release 4 for assay "H3K27ac" Illumina HiSeq 2500; 36
EGAD00001001297 McGill EMC Release 4 for assay "H3K4me3" Illumina HiSeq 2500; 42
EGAD00001001278 McGill EMC Release 4 in tissue "venous blood" for cell type "B cell" Illumina HiSeq 2500; 41
EGAD00001001283 McGill EMC Release 4 in tissue "venous blood" for cell type "T cell" Illumina HiSeq 2500; 20
EGAD00001001277 McGill EMC Release 4 in tissue "fat pad" for cell type "fat cell" Illumina HiSeq 2500; 1
EGAD00001001295 McGill EMC Release 4 for assay "H3K36me3" Illumina HiSeq 2500; 37
EGAD00001001288 McGill EMC Release 4 in tissue "skeletal muscle tissue" Illumina HiSeq 2500; 29
EGAD00001002705 McGill EMC Release 6 data Illumina HiSeq 2500;ILLUMINA 343
EGAD00001001279 McGill EMC Release 4 in tissue "venous blood" for cell type "CD4-positive helper T cell" Illumina HiSeq 2500; 55
EGAD00001001284 McGill EMC Release 4 in tissue "Brodmann (1909) area 11" Illumina HiSeq 2500; 1
EGAD00001001276 McGill EMC Release 4 for cell type "induced pluripotent stem cell" Illumina HiSeq 2500; 8
EGAD00001001300 McGill EMC Release 4 for assay "ATAC-seq": Sequencing of transposase-accessible chromatin as described by Buenrostro et al. (Nature Methods 10, 1213?1218 (2013) doi:10.1038/nmeth.2688) Illumina HiSeq 2500; 1
EGAD00001001291 McGill EMC Release 4 for assay "mRNA-seq": Transcriptome profiling by high-throughput sequencing Illumina HiSeq 2500; 40
EGAD00001001289 McGill EMC Release 4 for assay "Bisulfite-seq": Methylation profiling by high-throughput sequencing Illumina HiSeq 2500; 44
EGAD00001001299 McGill EMC Release 4 for assay "H3K9me3" Illumina HiSeq 2500; 29
EGAD00001001286 McGill EMC Release 4 in tissue "Brodmann (1909) area 8;Brodmann (1909) area 9" Illumina HiSeq 2500; 1
EGAD00001001281 McGill EMC Release 4 in tissue "venous blood" for cell type "eosinophil" Illumina HiSeq 2500; 3
EGAD00001003142 RNA sequencing of 31 patient-derived fibroblast cell lines from patients with inborn errors of cobalamin (vitamin B12) metabolism, and 7 control samples. The RNA seq library was prepared using the TruSeq Stranded Total RNA Sample Preparation Kit (Illumina RS-122–2301) including Ribo-Zero Gold depletion to remove ribosomal RNA. Sequencing was done via llumina Hi-Seq2000 sequencer, using 100bp paired end reads. Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) 38