GBM-ZEB1 Data Access Committee

Philipp Euskirchen
philipp.euskirchen@charite.de

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Dataset ID	Description	Technology	Samples
EGAD00001001627	This dataset contains RNA sequencing raw data from four parental tumors that were used for classification of gene expression subtypes (Verhaak, Cancer Cell 2010) using ssGSEA.	Illumina HiSeq 2000	4
EGAD00001002893	This dataset contains all RNA-seq runs for the BLN panel of cell lines and matched parental tumors. Tumor/cell line pairs have been authenticated using SNP profiles and all pairs were confirmed. Please note: The dataset also contains raw data from an early primary culture (BLN-1) where no stable cell line could be generated. Please also note different reference genomes.	Illumina HiSeq 2000	21
EGAD00001009663	Nanopore low-pass WGS of human brain tumors for evaluation of DNA methylation-based classification of cancer	MinION	16
EGAD50000000269	This dataset contains 21 pediatric brain tumor cases which where obtained during surgery using a cavitating ultrasonic aspiration and submitted to nanopore whole genome sequencing.	MinION	21