Access to public datasets in the EGA

Dac ID Contact Person Email Access Information
EGAC00001000514 The EGA Helpdesk helpdesk [at] ega-archive [dot] org No additional information is available

This DAC controls 33 datasets:

Dataset ID Description Technology Samples
EGAD00000000059 Aggregate results from 43 Carbamazepine-induced hypersensitivity syndrome patients and 1296 1958 British Birth Cohort control samples Affymetrix 500K, Illumina 610K Quad 1339
EGAD00000000115 Summary data from GWAS analysis on 856 cases and 2836 control Illumina CytoSNP-12 3719
EGAD00000000058 Aggregate results from 22 Carbamazepine-induced hypersensitivity syndrome patients and 2691 UK National Blood Service (NBS) control samples Illumina Infinium 1.2M 2713
EGAD00010000434 Normalised mRNA expression Illumina HT 12 1302
EGAD00010000438 Normalized miRNA expression data Agilent ncRNA 60k 1480
EGAD00010000444 Agilent ncRNA 60k txt files Agilent ncRNA 60k 1480
EGAD00010000215 Segmented (CBS) copy number aberrations (CNA); validation set Affymetrix SNP 6.0 995
EGAD00010000217 Segmented (HMM) copy number aberrations (CNA); discovery set Affymetrix SNP 6.0 997
EGAD00010000212 Normalized expression data; normals Illumina HT 12 144
EGAD00010000211 Normalized expression data; validation set Illumina HT 12 995
EGAD00010000213 Segmented (CBS) copy number aberrations (CNA); discovery set Affymetrix SNP 6.0 997
EGAD00010000210 Normalized expression data; discovery set Illumina HT 12 997
EGAD00010000216 Segmented (CBS) copy number variants (CNV); validation set Affymetrix SNP 6.0 995
EGAD00010000214 Segmented (CBS) copy number variants (CNV); discovery set Affymetrix SNP 6.0 997
EGAD00000000028 Aggregate results from a GWAS study on 3352 cases abd 3145 controls iSelect Beadchip 6497
EGAD00010000300 Summary statistics from Haemgen RBC GWAS Illumina, Affymetrix, Perlegen 1
EGAD00000000029 Aggregate results from a case-control study on stroke and ischemic stroke. 19602
EGAD00010000528 Illumina HumanHT-12 v4 array 0
EGAD00010000440 Segmented copy number data Affymetrix_SNP6_raw 1302
EGAD00001002250 mRNA-Seq, HiSeq 2000 dataset of the Cell-line use case Illumina HiSeq 2000; 1
EGAD00001002109 TSACP TruSeq Amplicon Panel dataset for the TraIT cell line use case 5
EGAD00001002069 Complete genomics data for VCaP and PC346c. 2
EGAD00001002071 qDNAseq shallow sequencing dataset of the cell line use case. 5
EGAD00001001626 RNA-Seq Illumina GAII dataset for the TraIT cell-line use case (added reverse and forward reads). Illumina Genome Analyzer II; 6
EGAD00010000936 Affymetrix Exon Array dataset Affymetrix GeneChip Human Exon 1.0 ST 2
EGAD00010001006 Proteomics LC-MS MS dataset Liquid chromatography–mass spectrometry 8
EGAD00010000934 Agilent miRNA dataset Agilent SurePrint Human miRNA Microarray 2
EGAD00010000937 ACGH 180K dataset Agilent 180K 5
EGAD00010000935 ACGH 244K dataset Agilent 244K 10
EGAD00010000939 Illumina 1M SNP Array dataset Illumina 1M SNP Array 2
EGAD00010000938 mRNA Array Agilent 44K dataset Agilent 44K 16
EGAD00001002771 Modified alignments based on a single sample, each with different characteristics 61
EGAD00010001029 Summary statistics for a multi-cohort epigenome-wide association study. This includes summary statistics (effect-size, standard error, p-value) for 470,000 methylation markers. 0