Access to public datasets in the EGA

Dac ID Contact Person Email Access Information
EGAC00001000514 The EGA Helpdesk helpdesk [at] ega-archive [dot] org No additional information is available

This DAC controls 25 datasets:

Dataset ID Description Technology Samples
EGAD00000000028 Aggregate results from a GWAS study on 3352 cases abd 3145 controls unknown 6497
EGAD00000000029 Aggregate results from a case-control study on stroke and ischemic stroke. 19602
EGAD00000000058 Aggregate results from 22 Carbamazepine-induced hypersensitivity syndrome patients and 2691 UK National Blood Service (NBS) control samples unknown 2713
EGAD00000000059 Aggregate results from 43 Carbamazepine-induced hypersensitivity syndrome patients and 1296 1958 British Birth Cohort control samples unknown 1
EGAD00000000115 Summary data from GWAS analysis on 856 cases and 2836 control unknown 3719
EGAD00001001626 RNA-Seq Illumina GAII dataset for the TraIT cell-line use case (added reverse and forward reads). Illumina Genome Analyzer II 6
EGAD00001002069 Complete genomics data for VCaP and PC346c. 2
EGAD00001002071 qDNAseq shallow sequencing dataset of the cell line use case. 5
EGAD00001002109 TSACP TruSeq Amplicon Panel dataset for the TraIT cell line use case 5
EGAD00001002250 mRNA-Seq, HiSeq 2000 dataset of the Cell-line use case Illumina HiSeq 2000 1
EGAD00001003971 ICGC-TCGA DREAM Somatic Mutation Calling - Tumour Heterogeneity Challenge - WGS mapped reads 59
EGAD00010000300 Summary statistics from Haemgen RBC GWAS Illumina,Affymetrix,Perlegen 1
EGAD00010000434 Normalised mRNA expression Illumina HT 12 1302
EGAD00010000438 Normalized miRNA expression data Agilent ncRNA 60k 1480
EGAD00010000440 Segmented copy number data Affymetrix_SNP6_raw 1302
EGAD00010000444 Agilent ncRNA 60k txt files Agilent ncRNA 60k 1480
EGAD00010000528 Illumina HumanHT-12 v4 array 0
EGAD00010000934 Agilent miRNA dataset Agilent SurePrint Human miRNA Microarray 2
EGAD00010000935 ACGH 244K dataset Agilent 244K 10
EGAD00010000936 Affymetrix Exon Array dataset Affymetrix GeneChip Human Exon 1.0 ST 2
EGAD00010000937 ACGH 180K dataset Agilent 180K 5
EGAD00010000938 mRNA Array Agilent 44K dataset Agilent 44K 16
EGAD00010000939 Illumina 1M SNP Array dataset Illumina 1M SNP Array 2
EGAD00010001006 Proteomics LC-MS MS dataset Liquid chromatography–mass spectrometry 8
EGAD00010001029 Summary statistics for a multi-cohort epigenome-wide association study. This includes summary statistics (effect-size, standard error, p-value) for 470,000 methylation markers. 0