DAC
Access to public datasets in the EGA
This DAC controls 26 datasets:
| Dataset ID | Description | Technology | Samples |
|---|---|---|---|
| EGAD00000000028 | Aggregate results from a GWAS study on 3352 cases abd 3145 controls | unknown | 6497 |
| EGAD00000000029 | Aggregate results from a case-control study on stroke and ischemic stroke. | 19602 | |
| EGAD00000000058 | Aggregate results from 22 Carbamazepine-induced hypersensitivity syndrome patients and 2691 UK National Blood Service (NBS) control samples | Illumina Infinium 1.2M | 2713 |
| EGAD00000000059 | Aggregate results from 43 Carbamazepine-induced hypersensitivity syndrome patients and 1296 1958 British Birth Cohort control samples | unknown | 1339 |
| EGAD00000000115 | Summary data from GWAS analysis on 856 cases and 2836 control | Illumina CytoSNP-12 | 3719 |
| EGAD00001001626 | RNA-Seq Illumina GAII dataset for the TraIT cell-line use case (added reverse and forward reads). | Illumina Genome Analyzer II | 6 |
| EGAD00001002069 | Complete genomics data for VCaP and PC346c. | 2 | |
| EGAD00001002071 | qDNAseq shallow sequencing dataset of the cell line use case. | 5 | |
| EGAD00001002109 | TSACP TruSeq Amplicon Panel dataset for the TraIT cell line use case | 5 | |
| EGAD00001002250 | mRNA-Seq, HiSeq 2000 dataset of the Cell-line use case | Illumina HiSeq 2000 | 1 |
| EGAD00001002771 | Modified alignments based on a single sample, each with different characteristics | 61 | |
| EGAD00001003971 | ICGC-TCGA DREAM Somatic Mutation Calling - Tumour Heterogeneity Challenge - WGS mapped reads | 59 | |
| EGAD00010000300 | Summary statistics from Haemgen RBC GWAS | Illumina,Affymetrix,Perlegen | 1 |
| EGAD00010000434 | Normalised mRNA expression | Illumina HT 12 | 1302 |
| EGAD00010000438 | Normalized miRNA expression data | Agilent ncRNA 60k | 1480 |
| EGAD00010000440 | Segmented copy number data | Affymetrix_SNP6_raw | 1302 |
| EGAD00010000444 | Agilent ncRNA 60k txt files | Agilent ncRNA 60k | 1480 |
| EGAD00010000528 | Illumina HumanHT-12 v4 array | 0 | |
| EGAD00010000934 | Agilent miRNA dataset | Agilent SurePrint Human miRNA Microarray | 2 |
| EGAD00010000935 | ACGH 244K dataset | Agilent 244K | 10 |
| EGAD00010000936 | Affymetrix Exon Array dataset | Affymetrix GeneChip Human Exon 1.0 ST | 2 |
| EGAD00010000937 | ACGH 180K dataset | Agilent 180K | 5 |
| EGAD00010000938 | mRNA Array Agilent 44K dataset | Agilent 44K | 16 |
| EGAD00010000939 | Illumina 1M SNP Array dataset | Illumina 1M SNP Array | 2 |
| EGAD00010001006 | Proteomics LC-MS MS dataset | Liquid chromatography–mass spectrometry | 8 |
| EGAD00010001029 | Summary statistics for a multi-cohort epigenome-wide association study. This includes summary statistics (effect-size, standard error, p-value) for 470,000 methylation markers. | 0 |
