Test dataset: Sequence and variant data from public 1000 Genomes Project

10/10/2017
6 samples
DAC: EGAC00001000514
Technologies: AB SOLiD 4 System, unspecified

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EGA Test Policy

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001002472	CINECA synthetic data.Please note: This study contains synthetic data (with cohort “participants” / ”subjects” marked with FAKE) has no identifiable data and cannot be used to make any inference about cohort data or results.	Other
EGAS00001005042	Test Study for EGA using data from 1000 Genomes Project - Phase 3	Whole Genome Sequencing
EGAS00001006718	Test Study for EGA using data from 1000 Genomes Project - Big CRAM, BAM, VCF and BCF files used for testing	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00001753734	cram	45.1 GB	Report
EGAF00001753735	crai	1.6 MB
EGAF00001753736	cram	38.2 GB	Report
EGAF00001753737	crai	1.3 MB
EGAF00001753738	cram	38.4 GB	Report
EGAF00001753739	crai	1.3 MB
EGAF00001753740	cram	34.8 GB	Report
EGAF00001753741	crai	1.2 MB
EGAF00001753742	cram	44.1 GB	Report
EGAF00001753743	crai	1.5 MB
EGAF00001753744	cram	48.3 GB	Report
EGAF00001753745	crai	1.6 MB
EGAF00001753746	bam	143.5 GB	Report
EGAF00001753747	bai	9.0 MB
EGAF00001753748	bam	4.3 GB
EGAF00001753749	bai	9.2 MB
EGAF00001753750	bam	66.2 GB
EGAF00001753751	bai	9.2 MB
EGAF00001753752	bam	229.9 GB
EGAF00001753753	bai	9.4 MB
EGAF00001753754	bam	136.1 GB
EGAF00001753755	bai	9.0 MB
EGAF00001753756	bam	140.5 GB
EGAF00001753757	bai	9.0 MB
EGAF00001770106	bam	462.3 MB	Report
EGAF00001770107	bam	3.6 GB	Report
EGAF00001775034	bai	6.0 MB
EGAF00001775036	bai	4.8 MB
EGAF00005000662	vcf.gz	25.5 MB	Report
EGAF00005000663	tbi	18.6 kB
EGAF00005000664	bcf	27.0 MB
EGAF00005000665	csi	14.5 kB
EGAF00005001623	vcf.gz	214.5 MB	Report
EGAF00005001624	tbi	36.1 kB
EGAF00005001625	bcf	186.5 MB
EGAF00005001626	csi	27.6 kB
EGAF00005007180	cram	1.8 GB
EGAF00005007181	cram	2.9 GB
EGAF00005007323	vcf.gz	5.7 MB	Report
EGAF00005007324	tbi	8.1 kB
EGAF00005007325	bcf	5.5 MB
EGAF00005007326	csi	6.3 kB
EGAF00005007327	vcf.gz	851.1 kB	Report
EGAF00005007328	tbi	5.0 kB
EGAF00005007329	bcf	876.7 kB
EGAF00005007330	csi	4.7 kB
EGAF00005007331	crai	137.5 kB
EGAF00005007332	crai	229.4 kB
EGAF00007243773	bam	194.9 kB	Report
EGAF00007243774	cram	135.2 kB	Report
EGAF00007243775	vcf.gz	23.0 kB
EGAF00007243776	tbi	2.0 kB
EGAF00007243777	bam	122.5 kB	Report
EGAF00007243778	cram	112.3 kB	Report
EGAF00007243779	vcf.gz	15.4 kB	Report
EGAF00007243780	tbi	2.0 kB
EGAF00007243781	bai	27.1 kB
EGAF00007243782	bai	29.6 kB
EGAF00007243783	crai	95 Bytes
EGAF00007243784	crai	92 Bytes
EGAF00007462299	bam	16.0 GB
EGAF00007462300	cram	7.4 GB
EGAF00007462301	bam	69.7 GB
EGAF00007462302	cram	34.9 GB
EGAF00007462303	bam	8.2 GB
EGAF00007462304	cram	4.2 GB
EGAF00007462305	bam	68.9 GB
EGAF00007462306	cram	37.0 GB
EGAF00007553556	bcf	14.6 GB
EGAF00007553557	vcf.gz	16.8 GB	Report
EGAF00007553558	bcf	2.1 GB
EGAF00007553559	vcf.gz	2.4 GB	Report
EGAF00007553560	tbi	2.7 MB
EGAF00007553561	tbi	434.2 kB
EGAF00008047669	bcf	14.6 GB
EGAF00008047670	csi	2.3 MB
EGAF00008047671	bcf	2.1 GB
EGAF00008047672	csi	353.2 kB
78 Files (1.3 TB)