OICR-DAC, Ontario Institute for Cancer Research

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OICR DAC ADMIN
oicr-dac@oicr.on.ca

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This DAC controls 20 datasets

Dataset ID	Description	Technology	Samples
EGAD00001003234	Aligned whole genome sequence from AML relapse project		33
EGAD00001003583	516 DNA samples were collected from individuals upon enrollment into the European Prospective Investigation into Cancer and Nutrition study between 1993 and 1998 across 17 different centers. 126bp pair-end reads sequencing data from the Illumina platform were converted to fastq format, the 2bp molecular barcode information at each read of the pair was trimmed and was written in the reads name. The Thymine nucleotide required for ligation was removed from the sequences. Burroughs-Wheeler Aligner (BWA-mem) was used for alignment of the processed fastq files to the reference hg19 genome, following indel-re-alignment using GATK. An in-house algorithm was written to collapse read families that share the same molecular barcode sequence		516
EGAD00001003589	Ultra-Fast Patient-Derived Xenografts Identify Functional and Spatial Tumour Heterogeneities that Drive Therapeutic Resistance - WXS mapped reads		27
EGAD00001003590	Ultra-Fast Patient-Derived Xenografts Identify Functional and Spatial Tumour Heterogeneities that Drive Therapeutic Resistance - WXS unaligned reads	Illumina HiSeq 2500	27
EGAD00001003816	HALT AML mRNA - RNASeq mapped reads		22
EGAD00001004397	We profiled the transcriptomes (RNA-sequencing) of 40 clinically significant invisible and visible tumors, all with ISUP Grade 2 disease and treated by radical prostatectomy. Twenty tumors were mpMRI invisible (PI-RADSv2: 1-2), while 20 tumors were visible (PI-RADsv2: 5).	Illumina HiSeq 3000	40
EGAD00001005261	CB: Aligned sequences used in the error modeling study		10
EGAD00001005270	AML-MRD: Aligned sequences used in the error modeling study		96
EGAD00001007789	SmMIP libraries using cord blood DNA were generated in replicates and were sequenced on the NovaSeq SP platform (Illumina)		16
EGAD00001007790	SmMIP libraries using bulk cell line DNA and DNA mixes were generated in replicates and were sequenced on the NovaSeq SP platform (Illumina)		44
EGAD00001007791	SmMIP libraries using DNA from patients diagnosed with myeloid malignancies were generated in replicates and were sequenced on the NovaSeq SP platform (Illumina)		336
EGAD00001010307	This dataset is derived from whole-transcriptome sequencing (RNA-seq) of RNA from 57 BCR-ABL1 lymphoblastic leukemias (53 diagnostic, 4 relapse).		57
EGAD00001010323	This dataset is derived from whole-genome sequencing (WGS) of DNA from 57 BCR-ABL1 lymphoblastic leukemias (53 diagnostic, 4 relapse) and 53 germline samples.		110
EGAD00010001540	Oncoscan CHP files for the Mesothelemia Project	Illumina Oncoscan Array	100
EGAD00010001626	mpMRI visible prostate tumour samples (PI-RADSv2 5)	OncoScan	20
EGAD00010001627	mpMRI invisible prostate tumour samples	OncoScan	20
EGAD50000001390	Linked-read whole genome sequencing data of 15 normal blood samples from brain tumour patients. The dataset consists of BAM files generated by the Long Ranger pipeline from 10x Genomics.		15
EGAD50000001391	Linked-read whole genome sequencing data of 31 glioma samples from 20 patients, including 7 matched blood samples		38
EGAD50000001691	Whole-genome sequencing of normal blood and brain tissue using Biomodal multi-omics technology.	Illumina NovaSeq 6000	2
EGAD50000001692	Three AML samples from patients with mutations in DNMT3A, IDH2, TET2, and a control sample of whole genome amplified DNA.	GridION	4