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1000IBD Data Access Committee UMCG

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Ms Inge Schuiling
i.schuiling@umcg.nl

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This DAC controls 14 datasets

Dataset ID	Description	Technology	Samples
EGAD00001003935	Sequencing of V4 hypervariable region of 16S gene of microbiota present in feces of IBD patients		315
EGAD00001003936	Sequencing of V4 hypervariable region of 16S gene from microbiota present in intestinal biopsies of IBD patients		107
EGAD00001003991	Complete clinical phenotypic description of all patients; the number listed represents all the samples linked to the 609 patients present in the dataset. Please consult the key file to visualise the sample-patient relationship		1094
EGAD00001004194	Complete Microbiome Metagenomics from feces of 461 IBD patients; The sequencer used was the Illumina HiSeq 2000 with a paired end reads design, reflected in the 2 FastQ format files per sample.	Illumina HiSeq 2000	355
EGAD00001006789	eQTLsummary&GeneTable from eQTL study in 299 intestinal biopsy samples from IBD		1
EGAD00001006790	intrstinal.eQTLsummary		1
EGAD00001006791	eQTL.study.release.phenotype		1
EGAD00001006792	eQTLsummary&GeneTable		1
EGAD00001006798	eQTL.study.release.inflammation.eQTLsummary		1
EGAD00001008214	This is the RNAseq data from mucosal biopsies.	Illumina HiSeq 2000	440
EGAD00001008215	This is the dataset of 16S data from mucosal biopsies.	Illumina MiSeq	833
EGAD00001010118	PhIP-Seq experiment conducted in Eran Sigal's group at WIS.	NextSeq 500	497
EGAD00010001495	Intensity files for Immunochip genotypes from blood	Illumina Immunochip	314
EGAD00010001649	This set features unfiltered, aligned, UMI-based single cell RNA sequencing count data for 5290 Blood, intraepithelial ileum (IEL) and lamina propria ileum (LPL) T cells from Crohn's disease patients as published in Uniken Venema et al, Gastroenterology 2019	Smartseq2_adapted	3