DAC for Hungarian human exome team (Department of Medical Biology, University of Szeged, Hungary)

Dac ID Contact Person Email Access Information
EGAC00001000838 Dr. Zsolt Boldogkoi boldogkoi [dot] zsolt [at] med [dot] u-szeged [dot] hu No additional information is available

This DAC controls 2 datasets:

Dataset ID Description Technology Samples
EGAD00001004082 In this study, we applied an Illumina HighSeq platform-based high-coverage WES technique, which, in addition to the exons, allows the determination of 5′- and 3′-UTRs, promoters to a certain length, along with off-target sequences, such as introns, intergenic regions and infecting viruses. Brains from suicide victims (n = 23; 15 males and eight female) who had suffered from major depressive disorder and from control participants (n = 21; 14 males and seven females) who had died from other causes were used for whole-exome sequencing. Alignment files in bam format were uploaded. Illumina HiSeq 2000 44
EGAD00001004184 Whole exome NGS data of 21 sucide victims and 23 control patients sequenced on Illumina HiSeq 2000 platform using the Agilent SureSelect Human All Exon + UTRs V5 target enrichment kit. The dataset contains the paired-end unfiltered FASTQ files, the GRCh37 (b37) aligned BAM files mapped by the BWA MEM algorithm, and the variant files in VCF 4.1 format called with the GATK HaploType caller (version 3.3). Illumina HiSeq 2000 44