Dataset

Whole-exome ultra-high throughput sequencing in brain samples of suicide victims who had suffered from major depressive disorder and control subjects who had died from other causes

Dataset ID Technology Samples
EGAD00001004184 Illumina HiSeq 2000 44

Dataset Description

Whole exome NGS data of 21 sucide victims and 23 control patients sequenced on Illumina HiSeq 2000 platform using the Agilent SureSelect Human All Exon + UTRs V5 target enrichment kit. The dataset contains the paired-end unfiltered FASTQ files, the GRCh37 (b37) aligned BAM files mapped by the BWA MEM algorithm, and the variant files in VCF 4.1 format called with the GATK HaploType caller (version 3.3).

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DAC for Hungarian human exome team (Department of Medical Biology, University of Szeged, Hungary)
Contact person: Dr. Zsolt Boldogkoi
Email: boldogkoi [dot] zsolt [at] med [dot] u-szeged [dot] hu
More details: EGAC00001000838

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