DAC
MERiC
Dac ID | Contact Person | Access Information | |
---|---|---|---|
EGAC00001000964 | Markus H Heim | markus [dot] heim [at] unibas [dot] ch | No additional information is available |
This DAC controls 2 datasets:
Dataset ID | Description | Technology | Samples |
---|---|---|---|
EGAD00001004205 | Whole-exome sequencing was performed from organoids derived from 10 liver cancer biopsies (7 hepatocellular carcinoma and 3 cholangiocarcinoma), corresponding liver and non-tumoral biopsies. For 3 of the organoids, both early and late passage organoids were sequenced. Whole-exome sequencing was performed using the Agilent Clinical Research Exome capture kit followed by Illumina sequencing. BAM files are provided in this dataset. | Illumina HiSeq 2500 | 31 |
EGAD00001004541 | RNA-sequencing of human hepatocellular carcinoma biopsies (n=14), 44 HCC xenografts derived from 11 HCC biopsies and 3 lymphoma xenografts derived from 3 HCC biopsies. RNA-sequencing was performed using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (lllumina). SR126 sequencing was performed on an Illumina HiSeq 2500 using v4 SBS chemistry according to the manufacturer’s guidelines. | Illumina HiSeq 2500 | 61 |