DAC

MERiC

Dac ID Contact Person Email Access Information
EGAC00001000964 Markus H Heim markus [dot] heim [at] unibas [dot] ch No additional information is available

This DAC controls 2 datasets:

Dataset ID Description Technology Samples
EGAD00001004205 Whole-exome sequencing was performed from organoids derived from 10 liver cancer biopsies (7 hepatocellular carcinoma and 3 cholangiocarcinoma), corresponding liver and non-tumoral biopsies. For 3 of the organoids, both early and late passage organoids were sequenced. Whole-exome sequencing was performed using the Agilent Clinical Research Exome capture kit followed by Illumina sequencing. BAM files are provided in this dataset. Illumina HiSeq 2500 31
EGAD00001004541 RNA-sequencing of human hepatocellular carcinoma biopsies (n=14), 44 HCC xenografts derived from 11 HCC biopsies and 3 lymphoma xenografts derived from 3 HCC biopsies. RNA-sequencing was performed using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (lllumina). SR126 sequencing was performed on an Illumina HiSeq 2500 using v4 SBS chemistry according to the manufacturer’s guidelines. Illumina HiSeq 2500 61