DAC

DAC of IKP-LIVER-NGS

Dac ID Contact Person Email Access Information
EGAC00001001214 Kathrin Klein kathrin [dot] klein [at] ikp-stuttgart [dot] de http://ikp-stuttgart.de/content/language1/html/15943.asp

This DAC controls 2 datasets:

Dataset ID Description Technology Samples
EGAD00001005116 Panel-based next-generation sequencing data of 150 human surgical liver samples from Caucasian donors. The panel was designed for 340 ADME (absorption, distribution, metabolism and excretion) and ADME-related genes. NGS was carried out on the Illumina HiSeq2500 system (Illumina Inc., San Diego, CA, United States) at high depth with 2 × 100 bps paired-end reads. Variants were called using samtools and varscan (2.3.5). Data on n=15,727 filtered variants for the 150 patients are comprised in one vcf file. Illumina HiSeq 2500 150
EGAD00010001709 Gene expression for 303 ADME and ADME related genes (averaged log2 signal intensities using Human-WG6v2 Expression BeadChip) Illumina Human-WG6v2 Expression BeadChip 150