DAC of IKP-LIVER-NGS

Dr Kathrin Klein
kathrin.klein@ikp-stuttgart.de

Request Access

Dataset ID	Description	Technology	Samples
EGAD00001005116	Panel-based next-generation sequencing data of 150 human surgical liver samples from Caucasian donors. The panel was designed for 340 ADME (absorption, distribution, metabolism and excretion) and ADME-related genes. NGS was carried out on the Illumina HiSeq2500 system (Illumina Inc., San Diego, CA, United States) at high depth with 2 × 100 bps paired-end reads. Variants were called using samtools and varscan (2.3.5). Data on n=15,727 filtered variants for the 150 patients are comprised in one vcf file.		150
EGAD00010001709	Gene expression for 303 ADME and ADME related genes (averaged log2 signal intensities using Human-WG6v2 Expression BeadChip)	Illumina Human-WG6v2 Expression BeadChip	150