DAC

DAC of IKP-LIVER-NGS

Dac ID Contact Person Email Access Information
EGAC00001001214 Kathrin Klein kathrin [dot] klein [at] ikp-stuttgart [dot] de http://ikp-stuttgart.de/content/language1/html/15943.asp

This DAC controls 2 datasets:

Dataset ID Description Technology Samples
EGAD00001005116 Panel-based next-generation sequencing data of 150 human surgical liver samples from Caucasian donors. The panel was designed for 340 ADME (absorption, distribution, metabolism and excretion) and ADME-related genes. NGS was carried out on the Illumina HiSeq2500 system (Illumina Inc., San Diego, CA, United States) at high depth with 2 × 100 bps paired-end reads. Variants were called using samtools and varscan (2.3.5). Data on n=15,727 filtered variants for the 150 patients are comprised in one vcf file. 150
EGAD00010001709 Gene expression for 303 ADME and ADME related genes (averaged log2 signal intensities using Human-WG6v2 Expression BeadChip) Illumina Human-WG6v2 Expression BeadChip 150