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Dataset

Panel-based NGS data for ADME genes in human liver samples

Dataset ID Technology Samples
EGAD00001005116 N/A 150

Dataset Description

Panel-based next-generation sequencing data of 150 human surgical liver samples from Caucasian donors. The panel was designed for 340 ADME (absorption, distribution, metabolism and excretion) and ADME-related genes. NGS was carried out on the Illumina HiSeq2500 system (Illumina Inc., San Diego, CA, United States) at high depth with 2 × 100 bps paired-end reads. Variants were called using samtools and varscan (2.3.5). Data on n=15,727 filtered variants for the 150 patients are comprised in one vcf file.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

DAC of IKP-LIVER-NGS
Contact person: Kathrin Klein
Email: kathrin [dot] klein [at] ikp-stuttgart [dot] de
Access information: http://ikp-stuttgart.de/content/language1/html/15943.asp
More details: EGAC00001001214

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