Hartwig Medical Foundation Data Access Board

Data Access
dataaccess@hartwigmedicalfoundation.nl

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Dataset ID	Description	Technology	Samples
EGAD00001005525	Validation data containing sequencing data of 13 samples. An hybrid capture approach was used to validate findings of both Manta and GRIDSS for the samples in the validation set. The dataset also contains the reference sequences used.	Illumina NovaSeq 6000	13
EGAD50000000668	Simulated (based on real world data) tumor normal pair designed for benchmarking and optimisation of structural variation callers. The calls are derived from 12 patients in the hartwig database requested by the EUCANCan project. Paired-end sequencing data was imputed into the normal reference data to simulate real world variation like purity as well as technical impact of sequencing technologies. The dataset contains a tumor sequenced to ±90x depth and a normal control sequenced to ±30 x depth of these imputed events. The break junctions of all detected SVs in the original cases are imputed in this data from diagnostic WGS sequencing data.	Illumina NovaSeq 6000	1