Tumor Normal Pair for SV mosaic
Simulated (based on real world data) tumor normal pair designed for benchmarking and optimisation of structural variation callers. The calls are derived from 12 patients in the hartwig database requested by the EUCANCan project. Paired-end sequencing data was imputed into the normal reference data to simulate real world variation like purity as well as technical impact of sequencing technologies. The dataset contains a tumor sequenced to ±90x depth and a normal control sequenced to ±30 x depth of these imputed events. The break junctions of all detected SVs in the original cases are imputed in this data from diagnostic WGS sequencing data.
- 14/08/2024
- 1 sample
- DAC: EGAC00001001398
- Technology: Illumina NovaSeq 6000
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The principles and guidelines and policies of Hartwig Medical Foundation can be found at https://www.hartwigmedicalfoundation.nl/en/data-policy/. Handling data with care Hartwig Medical Foundation applies core values on which its choices are based. For the usage of data provided by patients and institutions, these core values have been translated into basic principles and guidelines in four different fields (social, ethical, legal and contractual). Privacy policy Needless to say, Hartwig Medical Foundation applies a strict privacy policy for the usage of personal data. Publication policy If the data from the database are used for scientific research resulting in publications, or from scientific publications derived from the database, the publication policy of Hartwig Medical Foundation applies.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000460 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000158691 | cram | 90.6 GB | ||
| EGAF50000158692 | cram | 28.9 GB | ||
| 2 Files (119.5 GB) | ||||