DAC

Plasma cells in coeliac disease Data Access Committee

Dac ID Contact Person Email Access Information
EGAC00001001753 Ludvig M. Sollid l [dot] m [dot] sollid [at] medisin [dot] uio [dot] no No additional information is available

This DAC controls 2 datasets:

Dataset ID Description Technology Samples
EGAD00001006435 The dataset contains metadata for all cells before scRNA-seq quality control and for cells passing quality control. It also contains a count matrix with Salmon gene counts for all cells passing quality control, and reconstructed B-cell receptor sequences using the computational tool BraCeR. The scRNA-seq data was generated using the Smart-seq2 protocol and sequenced on Illumina NextSeq500. 12
EGAD00001006436 This dataset contains scRNA-seq fastq files (trimmed for quality and adapters using Trim Galore) for 3739 intestinal plasma cells of known or unknown antigen specificities from in total 12 individuals (4 untreated coeliac disease patients, 3 treated coeliac disease patients, 5 controls). The data was generated using the Smart-seq2 protocol and sequenced on the Illumina NextSeq500 platform with 75 bp paired-end reads. NextSeq 500 12