scRNA-seq raw data

Dataset ID Technology Samples
EGAD00001006436 NextSeq 500 12

Dataset Description

This dataset contains scRNA-seq fastq files (trimmed for quality and adapters using Trim Galore) for 3739 intestinal plasma cells of known or unknown antigen specificities from in total 12 individuals (4 untreated coeliac disease patients, 3 treated coeliac disease patients, 5 controls). The data was generated using the Smart-seq2 protocol and sequenced on the Illumina NextSeq500 platform with 75 bp paired-end reads.

Who controls access to this dataset

For each dataset that requires controlled access, there is a corresponding Data Access Committee (DAC) who determine access permissions. Access to actual data files is not managed by the EGA. If you need to request access to this data set, please contact:

Plasma cells in coeliac disease Data Access Committee
Contact person: Ludvig M. Sollid
Email: l [dot] m [dot] sollid [at] medisin [dot] uio [dot] no
More details: EGAC00001001753


You don't have access to the download section.