DAC

RNA-seq from FFPE - Englander Institute for Precision Medicine - Weill Cornell Medicine DAC

Dac ID Contact Person Email Access Information
EGAC00001002098 Noah Greco nog9013 [at] med [dot] cornell [dot] edu No additional information is available

This DAC controls 1 dataset:

Dataset ID Description Technology Samples
EGAD00001007655 This dataset includes all FASTQ files for 11 samples where different capture-based methods for transcriptome profiling have been tested. Specifically, we have the 'traditional' RNA-seq experiment with fresh frozen (FF) material, and 3 different capture methods for the matching formalin-fixed paraffin-embedded samples: Agilent (AGI), IDT, and Twist Biosciences (TBS). In total, there are 43 samples with paired-end FASTQ files (1 sample did not have sufficient material to test all methods). Samples are identified by the R01-R11 IDs with a suffix that indicates the capture method used (or FF for fresh frozen). Illumina HiSeq 2500,Illumina HiSeq 4000 43