Capture-based Methods for Transcriptomic Profiling of FFPE material

Dataset ID Technology Samples
EGAD00001007655 Illumina HiSeq 2500,Illumina HiSeq 4000 43

Dataset Description

This dataset includes all FASTQ files for 11 samples where different capture-based methods for transcriptome profiling have been tested. Specifically, we have the 'traditional' RNA-seq experiment with fresh frozen (FF) material, and 3 different capture methods for the matching formalin-fixed paraffin-embedded samples: Agilent (AGI), IDT, and Twist Biosciences (TBS).
In total, there are 43 samples with paired-end FASTQ files (1 sample did not have sufficient material to test all methods).
Samples are identified by the R01-R11 IDs with a suffix that indicates the capture method used (or FF for fresh frozen).

Data Use Conditions

See further information on Data Use Conditions

Label Code Version Modifier
general research use DUO:0000042 2019-01-07
population origins or ancestry research prohibited DUO:00000044 2021-02-23