Varn Lab Data Access Committee

Olivia Bart
data_access@jax.org

Request Access

Dataset ID	Description	Technology	Samples
EGAD00001007769	This dataset includes 914 BAM files from 6 IDH-mutant, 5 IDH-wild-type glioma patient samples of unmatched initial and recurrent timepoints profiled using single-cell reduced-representation bisulfite sequencing.	Illumina HiSeq 4000	914
EGAD00001007770	This dataset includes 60 BAM files from HF2354, HF3016 glioblastoma cell lines subjected to continuous stress (hypoxia, 3-day and 9-day), stress followed by recovery (irradiation, 4-day stress exposure and 5-day recovery), and no stress/normoxia controls and profiled using reduced-representation bisulfite sequencing.	Illumina NovaSeq 6000	60
EGAD00001007771	This dataset includes 22 BAM files for tumor tissue and matched normal blood from 6 IDH-mutant, 5 IDH-wild-type glioma patient samples of unmatched initial and recurrent timepoints profiled using whole genome sequencing.	Illumina NovaSeq 6000	22
EGAD00001007772	This dataset includes paired-end fastq files from 6 IDH-mutant, 5 IDH-wild-type glioma patient samples of unmatched initial and recurrent timepoints profiled using single-cell RNA sequencing.	Illumina HiSeq 4000 Illumina NovaSeq 6000	11
EGAD00010002157	This dataset includes IDAT files from 6 IDH-mutant, 5 IDH-wild-type glioma patient samples of unmatched initial and recurrent timepoints profiled using the Illumina Infinium MethylationEPIC Array.	Illumina Infinium MethylationEPIC BeadChip	11