MD Anderson GU Data Access Committee

Padmanee Sharma
padsharma@mdanderson.org

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Dataset ID	Description	Technology	Samples
EGAD50000000566	scRNA-seq dataset for the study "Surgery in combination with immune checkpoint therapy as an effective treatment for patients with metastatic cancer." The dataset comprises 38 samples from 19 patients, with each pair includes a baseline (BL) sample and a post-biopsy or post-surgery sample. Each sample corresponds to an R1 (read 1) and an R2 (read 2) files (.fastq.gz) for paired reads. Beside procedure (biopsy or surgery), another important phenotype is response (PR and PD in this case, no SD for these patients), included in the description of the samples. The sequencing was performed using Illumina NovaSeq 6000 platform., as seen in the experiment description.	Illumina NovaSeq 6000	38
EGAD50000000953	This dataset includes WES data for 116 runs, corresponding to 58 pairs of normal(PBMC)/tumor samples from 58 patients (116 BAM files).	Illumina HiSeq 2500	116