About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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scRNA-seq dataset, RCC

scRNA-seq dataset for the study "Surgery in combination with immune checkpoint therapy as an effective treatment for patients with metastatic cancer." The dataset comprises 38 samples from 19 patients, with each pair includes a baseline (BL) sample and a post-biopsy or post-surgery sample. Each sample corresponds to an R1 (read 1) and an R2 (read 2) files (.fastq.gz) for paired reads. Beside procedure (biopsy or surgery), another important phenotype is response (PR and PD in this case, no SD for these patients), included in the description of the samples. The sequencing was performed using Illumina NovaSeq 6000 platform., as seen in the experiment description.

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All data will be firewalled and approved by the Data Access Committee per institutional agreement prior to release.

MDACC data policy.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001005667 Exome Sequencing
  • Added some details in the description
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000127406 fastq.gz 10.7 GB Report
EGAF50000127407 fastq.gz 4.3 GB Report
EGAF50000127408 fastq.gz 17.7 GB Report
EGAF50000127409 fastq.gz 7.2 GB Report
EGAF50000127410 fastq.gz 3.7 GB Report
EGAF50000127411 fastq.gz 9.2 GB Report
EGAF50000127412 fastq.gz 4.8 GB Report
EGAF50000127413 fastq.gz 11.7 GB Report
EGAF50000127414 fastq.gz 5.7 GB Report
EGAF50000127415 fastq.gz 14.1 GB Report
EGAF50000127416 fastq.gz 6.0 GB Report
EGAF50000127417 fastq.gz 14.9 GB Report
EGAF50000127418 fastq.gz 5.9 GB Report
EGAF50000127419 fastq.gz 14.7 GB Report
EGAF50000127420 fastq.gz 19.5 GB Report
EGAF50000127421 fastq.gz 7.9 GB Report
EGAF50000127422 fastq.gz 14.1 GB Report
EGAF50000127423 fastq.gz 6.5 GB Report
EGAF50000127424 fastq.gz 12.9 GB Report
EGAF50000127425 fastq.gz 5.4 GB Report
EGAF50000127426 fastq.gz 5.0 GB Report
EGAF50000127427 fastq.gz 12.3 GB Report
EGAF50000127428 fastq.gz 5.6 GB Report
EGAF50000127429 fastq.gz 13.6 GB Report
EGAF50000127430 fastq.gz 6.5 GB Report
EGAF50000127431 fastq.gz 15.9 GB Report
EGAF50000127432 fastq.gz 12.9 GB Report
EGAF50000127433 fastq.gz 5.3 GB Report
EGAF50000127434 fastq.gz 12.3 GB Report
EGAF50000127435 fastq.gz 5.1 GB Report
EGAF50000127436 fastq.gz 5.5 GB Report
EGAF50000127437 fastq.gz 13.6 GB Report
EGAF50000127438 fastq.gz 16.4 GB Report
EGAF50000127439 fastq.gz 8.1 GB Report
EGAF50000127440 fastq.gz 9.0 GB Report
EGAF50000127441 fastq.gz 19.7 GB
EGAF50000127442 fastq.gz 5.9 GB Report
EGAF50000127443 fastq.gz 14.6 GB Report
EGAF50000127444 fastq.gz 11.6 GB Report
EGAF50000127445 fastq.gz 4.7 GB Report
EGAF50000127446 fastq.gz 16.9 GB Report
EGAF50000127447 fastq.gz 6.9 GB Report
EGAF50000127448 fastq.gz 15.5 GB Report
EGAF50000127449 fastq.gz 6.3 GB Report
EGAF50000127450 fastq.gz 14.1 GB Report
EGAF50000127451 fastq.gz 5.7 GB Report
EGAF50000127452 fastq.gz 5.7 GB Report
EGAF50000127453 fastq.gz 13.8 GB Report
EGAF50000127454 fastq.gz 12.6 GB Report
EGAF50000127455 fastq.gz 5.2 GB Report
EGAF50000127456 fastq.gz 14.9 GB Report
EGAF50000127457 fastq.gz 6.1 GB Report
EGAF50000127458 fastq.gz 5.3 GB Report
EGAF50000127459 fastq.gz 13.2 GB Report
EGAF50000127460 fastq.gz 4.1 GB Report
EGAF50000127461 fastq.gz 9.9 GB Report
EGAF50000127462 fastq.gz 10.5 GB Report
EGAF50000127463 fastq.gz 4.3 GB Report
EGAF50000127464 fastq.gz 4.7 GB Report
EGAF50000127465 fastq.gz 11.4 GB Report
EGAF50000127466 fastq.gz 5.0 GB Report
EGAF50000127467 fastq.gz 12.2 GB Report
EGAF50000127468 fastq.gz 5.9 GB Report
EGAF50000127469 fastq.gz 14.5 GB Report
EGAF50000127470 fastq.gz 16.4 GB Report
EGAF50000127471 fastq.gz 6.7 GB Report
EGAF50000127472 fastq.gz 4.9 GB Report
EGAF50000127473 fastq.gz 12.0 GB Report
EGAF50000127474 fastq.gz 8.8 GB Report
EGAF50000127475 fastq.gz 17.5 GB
EGAF50000127476 fastq.gz 6.8 GB Report
EGAF50000127477 fastq.gz 16.7 GB Report
EGAF50000127478 fastq.gz 14.5 GB Report
EGAF50000127479 fastq.gz 5.9 GB Report
EGAF50000127480 fastq.gz 4.5 GB Report
EGAF50000127481 fastq.gz 11.0 GB Report
76 Files (751.0 GB)