Need Help?

Cancer Epigenetics Group

Contact Information

Manel Esteller Badosa
mesteller@carrerasresearch.org

Request Access

This DAC controls 9 datasets

Dataset ID	Description	Technology	Samples
EGAD00010002559	H5 files generated for each sample with Tapestri Pipeline	Tapestri	28
EGAD00010002560	Bed files as whitelist for Tapestri Insights analysis	Tapestri	2
EGAD00010002561	Loom files generated for each sample with Tapestri Pipeline	Tapestri	28
EGAD00010002562	Tap files from Tapestri Insights	Tapestri	28
EGAD50000000888	The dataset from Infinium Human MethylationEPIC v1.0 (IDAT files) includes 91 primary samples from patients with B-cell acute lymphoblastic leukemia (B-ALL) (n=34) and T-cell acute lymphoblastic leukemia (T-ALL) (n=57). This dataset was used in the article "A Comprehensive DNA Methylation Landscape of Human and Mouse Cell Lines Derived from Hematological Malignancies" to validate differentially methylated CpG sites, which were utilized to classify hematologic malignancies.	unspecified	91
EGAD50000001716	This dataset is comprised of 15 samples from single-cell protein sequencing data. There are 5 different patients with different timepoints (diagnosis, post-treatment and progression to AML). All files are raw FASTQ filessequenced by NovaSeq 6000/X (PE-150 configuration, Novogene).	Illumina NovaSeq 6000	15
EGAD50000001717	This dataset is comprised of 15 samples from single-cell methylation sequencing data. There are 5 different patients with different timepoints (diagnosis, post-treatment and progression to AML). All files are raw FASTQ filessequenced by NovaSeq 6000/X (PE-150 configuration, Novogene).	Illumina NovaSeq 6000	15
EGAD50000001718	This dataset is comprised of 15 samples from single-cell DNA sequencing data. There are 5 different patients with different timepoints (diagnosis, post-treatment and progression to AML). All files are raw FASTQ filessequenced by NovaSeq 6000/X (PE-150 configuration, Novogene).	Illumina NovaSeq 6000	15
EGAD50000001719	This dataset is comprised of 10 samples from single-cell protein sequencing data. There are 5 different patients with different timepoints (diagnosis and post-treatment). All files are raw FASTQ filessequenced by NovaSeq 6000/X (PE-150 configuration, Novogene).	Illumina NovaSeq 6000	10