VIB CCB Translational Genetics Data Access Committee

diether.lambrechts@kuleuven.be

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Dataset ID	Description	Technology	Samples
EGAD00001011342	Single-cell RNA sequencing of 43 bronchoalveolar lavage fluid (BALF) samples from 15 CAPA and 22 COVID-19 mechanically ventilated patients.	Illumina NovaSeq 6000	43
EGAD50000000317	We included 16 fresh tumor samples of biopsy-proven invasive penile squamous cell carcinomas and 6 adult non-malignant inner prepuce samples. Single-cell RNA sequencing was performed (10x genomics). An HPV reference genome of 15 high-risk HPV types was generated and we mapped all single cell reads to the GRCh38 human and HPV reference genome using CellRanger. Targeted next-generation sequencing (tNGS) was performed for the detection of TP53 loss-of-function mutations.	Illumina NovaSeq 6000	22
EGAD50000000574	This dataset contains the raw sequencing data (fastq-files) of 10 sample libraries. These are 10x genomics single-cell transcriptome libraries of human peripheral blood mononuclear cells (PBMC’s). The samples are taken from healthy, acute decompensated (AD) and acute chronic liver failure ACLF patients. The sequencing was performed on an Illumina NovaSeq6000. This data are related to the paper: "Distinct immunometabolic signatures in circulating immune cells define disease outcome in acute-on-chronic liver failure"	Illumina NovaSeq 6000	10