About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Single-cell RNA and TCR sequencing of 16 PSCC and 6 non-malignant samples

We included 16 fresh tumor samples of biopsy-proven invasive penile squamous cell carcinomas and 6 adult non-malignant inner prepuce samples. Single-cell RNA sequencing was performed (10x genomics). An HPV reference genome of 15 high-risk HPV types was generated and we mapped all single cell reads to the GRCh38 human and HPV reference genome using CellRanger. Targeted next-generation sequencing (tNGS) was performed for the detection of TP53 loss-of-function mutations.

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VIB Policy for Data Access and Data Transfer

VIB Policy for Data Access and Data Transfer Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000217 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000086892 fastq.gz 8.4 GB Report
EGAF50000086893 fastq.gz 6.5 GB Report
EGAF50000086894 fastq.gz 4.1 GB Report
EGAF50000086895 fastq.gz 9.4 GB Report
EGAF50000086896 fastq.gz 1.3 GB Report
EGAF50000086897 fastq.gz 2.8 GB Report
EGAF50000086898 fastq.gz 336.6 MB Report
EGAF50000086899 fastq.gz 7.0 GB Report
EGAF50000086900 fastq.gz 5.3 GB Report
EGAF50000086901 fastq.gz 9.4 GB Report
EGAF50000086902 fastq.gz 2.9 GB Report
EGAF50000086903 fastq.gz 6.3 GB Report
EGAF50000086904 fastq.gz 7.4 GB Report
EGAF50000086905 fastq.gz 3.5 GB Report
EGAF50000086906 fastq.gz 762.8 MB Report
EGAF50000086907 fastq.gz 3.4 GB Report
EGAF50000086908 fastq.gz 436.1 MB Report
EGAF50000086909 fastq.gz 1.0 GB Report
EGAF50000086910 fastq.gz 446.3 MB Report
EGAF50000086911 fastq.gz 993.1 MB Report
EGAF50000086912 fastq.gz 580.5 MB Report
EGAF50000086913 fastq.gz 1.4 GB Report
EGAF50000086914 fastq.gz 1.1 GB Report
EGAF50000086915 fastq.gz 2.4 GB Report
EGAF50000086916 fastq.gz 1.4 GB Report
EGAF50000086917 fastq.gz 3.1 GB Report
EGAF50000086918 fastq.gz 641.7 MB Report
EGAF50000086919 fastq.gz 1.5 GB Report
EGAF50000086920 fastq.gz 3.5 GB Report
EGAF50000086921 fastq.gz 687.5 MB Report
EGAF50000086922 fastq.gz 1.6 GB Report
EGAF50000086923 fastq.gz 15.4 GB Report
EGAF50000086924 fastq.gz 10.2 GB Report
EGAF50000086925 fastq.gz 26.1 GB Report
EGAF50000086926 fastq.gz 1.3 GB Report
EGAF50000086927 fastq.gz 3.1 GB Report
EGAF50000086928 fastq.gz 4.8 GB Report
EGAF50000086929 fastq.gz 9.6 GB Report
EGAF50000086930 fastq.gz 15.3 GB Report
EGAF50000086931 fastq.gz 20.2 GB Report
EGAF50000086932 fastq.gz 1.4 GB Report
EGAF50000086933 fastq.gz 22.8 GB Report
EGAF50000086934 fastq.gz 6.2 GB Report
EGAF50000086935 fastq.gz 13.6 GB Report
EGAF50000086936 fastq.gz 17.4 GB Report
EGAF50000086937 fastq.gz 5.1 GB Report
EGAF50000086938 fastq.gz 12.4 GB Report
EGAF50000086939 fastq.gz 6.9 GB Report
EGAF50000086940 fastq.gz 17.0 GB Report
EGAF50000086941 fastq.gz 8.2 GB Report
EGAF50000086942 fastq.gz 10.8 GB Report
EGAF50000086943 fastq.gz 25.8 GB Report
EGAF50000086944 fastq.gz 13.6 GB Report
EGAF50000086945 fastq.gz 34.7 GB Report
EGAF50000086946 fastq.gz 12.4 GB Report
EGAF50000086947 fastq.gz 8.1 GB Report
EGAF50000086948 fastq.gz 19.3 GB Report
EGAF50000086949 fastq.gz 535.3 MB Report
EGAF50000086950 fastq.gz 1.3 GB Report
EGAF50000086951 fastq.gz 750.3 MB Report
EGAF50000086952 fastq.gz 1.6 GB Report
EGAF50000086953 fastq.gz 1.2 GB Report
EGAF50000086954 fastq.gz 800.7 MB Report
EGAF50000086955 fastq.gz 1.8 GB Report
EGAF50000086956 fastq.gz 3.3 GB Report
EGAF50000086957 fastq.gz 3.2 GB Report
EGAF50000086958 fastq.gz 7.2 GB Report
EGAF50000086959 fastq.gz 9.5 GB Report
EGAF50000086960 fastq.gz 552.8 MB Report
EGAF50000086961 fastq.gz 1.8 GB Report
EGAF50000086962 fastq.gz 414.5 MB Report
EGAF50000086963 fastq.gz 979.6 MB Report
EGAF50000086964 fastq.gz 679.0 MB Report
EGAF50000086965 fastq.gz 1.6 GB Report
EGAF50000086966 fastq.gz 1.4 GB Report
EGAF50000086967 fastq.gz 133.3 MB Report
EGAF50000086968 fastq.gz 288.2 MB Report
EGAF50000086969 fastq.gz 721.2 MB Report
EGAF50000086970 fastq.gz 1.7 GB Report
EGAF50000086971 fastq.gz 610.4 MB Report
EGAF50000086972 fastq.gz 1.4 GB Report
EGAF50000086973 fastq.gz 447.7 MB Report
EGAF50000086974 fastq.gz 1.0 GB
EGAF50000086975 fastq.gz 382.5 MB Report
EGAF50000086976 fastq.gz 930.3 MB Report
EGAF50000086977 fastq.gz 11.3 GB Report
EGAF50000086978 fastq.gz 27.0 GB Report
EGAF50000086979 fastq.gz 4.6 GB Report
EGAF50000086980 xlsb 9.9 kB
89 Files (531.0 GB)