ecDNA amplification of MYC drives intratumor copy-number heterogeneity and adaptation to stress in PDAC

Vincenzo Corbo
vincenzo.corbo@univr.it

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Dataset ID	Description	Technology	Samples
EGAD50000000279	Whole genome sequencing profiling of 4 primary PDAC tissue samples - WGS unmapped reads, sequenced using NovaSeq 6000, 15x coverage 160 million reads per sample.	Illumina NovaSeq 6000	4
EGAD50000000280	Whole genome sequencing profiling of 41 PDAC patient-derived organoids (PDO) - WGS unmapped reads, sequenced using NovaSeq 6000, 15x coverage 160 million reads per sample.	Illumina NovaSeq 6000	41
EGAD50000000281	CIRCLE-seq data of PDAC 1 patient-derived organoid (PDO) - Unmapped reads, libraries were sequenced using the Illumina NextSeq500 with the NextSeq 500/550 Mid Output Kit v2.5 (300 Cycles), generating around 10M paired end 150bp reads per sample	NextSeq 500	1
EGAD50000000282	Whole genome sequencing profiling of 7 PDAC patient-derived organoids (PDO) grown in a culture medium lacking both WNT3A and RSPO1- WGS unmapped reads, sequenced using NovaSeq 6000, 15x coverage 160 million reads per sample.	Illumina NovaSeq 6000	7