Sant Joan de Déu Research Institute (IRSJD)

Mr Jordi Moretón Galí
jordi.moreton@sjd.es

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Dataset ID	Description	Technology	Samples
EGAD50000000981	This dataset contains the raw data of the RNA-seq experiments described in the paper "RNA-Sequencing: a reliable tool to unveil transcriptional landscape of pediatric B-other acute lymphoblastic leukemia" It contains the raw data from 60 pediatric patients diagnosed with B cell progenitor acute lymphoblastic leukemia lacking the main genetic alterations. RNA material was extracted from bone marrow or periphereal blood and RNA libraries were prepared using Illumina® TruSeq™ stranded mRNA kit following manufacturer's instructions and were sequenced in a NextSeq 550 using a v2 HighOutput 150 cycle kit 2x75bp. Funding: Instituto de Salud Carlos III (ISCIII), PI21/00213	NextSeq 500	60
EGAD50000003171	Raw sequencing data (FASTQ) from 16 patients with malignant rhabdoid tumours (9 ERRT, 5 ATRT, 2 KRT), generated with the 10x Genomics Chromium Single Cell Multiome ATAC + Gene Expression kit. Each patient sample has a gene expression library and an ATAC library from the same nuclei. ATAC runs include read 1, read 2 and the cell-barcode read (UMI2).	Illumina NovaSeq 6000	16
EGAD50000003172	Raw sequencing data (FASTQ) from fresh-frozen tumour sections of 11 patients with malignant rhabdoid tumours (5 ERRT, 4 ATRT, 2 KRT), generated with 10x Genomics Visium Spatial Gene Expression v1 (3').	Illumina NovaSeq 6000	11