About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Spatial transcriptomics (10x Visium) of Malignant Rhabdoid Tumors

Raw sequencing data (FASTQ) from fresh-frozen tumour sections of 11 patients with malignant rhabdoid tumours (5 ERRT, 4 ATRT, 2 KRT), generated with 10x Genomics Visium Spatial Gene Expression v1 (3').

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Sant Joan de Déu Research Institute (IRSJD) Data Access Policy

Access to this dataset is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed. The process is coordinated by the Knowledge Management Unit, please contact our general email address: frecerca.gestio.coneixement@sjd.es

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000002211 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50001069690 fastq.gz 2.2 GB
EGAF50001069691 fastq.gz 1.8 GB
EGAF50001069692 fastq.gz 4.1 GB
EGAF50001069693 fastq.gz 6.5 GB
EGAF50001069694 fastq.gz 14.5 GB
EGAF50001069695 fastq.gz 6.5 GB
EGAF50001069696 fastq.gz 14.5 GB
EGAF50001069697 fastq.gz 10.2 GB
EGAF50001069698 fastq.gz 22.6 GB
EGAF50001069699 fastq.gz 10.1 GB
EGAF50001069700 fastq.gz 22.6 GB
EGAF50001069847 fastq.gz 2.5 GB
EGAF50001069848 fastq.gz 1.1 GB
EGAF50001069849 fastq.gz 2.5 GB
EGAF50001069850 fastq.gz 2.3 GB
EGAF50001069851 fastq.gz 1.0 GB
EGAF50001069852 fastq.gz 2.3 GB
EGAF50001069853 fastq.gz 1.2 GB
EGAF50001069854 fastq.gz 2.6 GB
EGAF50001069855 fastq.gz 5.3 GB
EGAF50001069856 fastq.gz 2.3 GB
EGAF50001069857 fastq.gz 5.4 GB
EGAF50001069858 fastq.gz 1.1 GB
EGAF50001069859 fastq.gz 2.4 GB
EGAF50001069860 fastq.gz 1.1 GB
EGAF50001069861 fastq.gz 2.4 GB
EGAF50001069862 fastq.gz 1.7 GB
EGAF50001069863 fastq.gz 763.9 MB
EGAF50001069864 fastq.gz 1.5 GB
EGAF50001069865 fastq.gz 2.1 GB
EGAF50001069866 fastq.gz 5.1 GB
EGAF50001069867 fastq.gz 2.1 GB
EGAF50001069868 fastq.gz 5.1 GB
EGAF50001069869 fastq.gz 960.1 MB
EGAF50001069870 fastq.gz 1.9 GB
EGAF50001069871 fastq.gz 871.7 MB
EGAF50001069872 fastq.gz 1.7 GB
EGAF50001069873 fastq.gz 2.0 GB
EGAF50001069874 fastq.gz 4.5 GB
EGAF50001069875 fastq.gz 2.0 GB
EGAF50001069876 fastq.gz 4.6 GB
EGAF50001069877 fastq.gz 1.8 GB
EGAF50001069878 fastq.gz 4.1 GB
EGAF50001069961 fastq.gz 843.4 MB
EGAF50001069962 fastq.gz 1.0 GB
EGAF50001069963 fastq.gz 1.2 GB
EGAF50001069964 fastq.gz 2.6 GB
EGAF50001069975 fastq.gz 1.1 GB
48 Files (200.3 GB)